miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27462 5' -63.1 NC_005869.1 + 11723 0.69 0.143426
Target:  5'- -aAGCUGgGGCGGCGGCggcgggggugagCGcGGCCuCCc -3'
miRNA:   3'- ggUCGACgUCGUCGCCG------------GC-CCGGuGG- -5'
27462 5' -63.1 NC_005869.1 + 1934 0.71 0.08946
Target:  5'- uCCGGCagugGCAGCGG-GGCCGGGaugcgggACCa -3'
miRNA:   3'- -GGUCGa---CGUCGUCgCCGGCCCgg-----UGG- -5'
27462 5' -63.1 NC_005869.1 + 9207 0.71 0.092014
Target:  5'- uCCAGg-GCGGCGaUGGCCucGGCCACCg -3'
miRNA:   3'- -GGUCgaCGUCGUcGCCGGc-CCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 3666 0.7 0.105555
Target:  5'- gCAGCUGCAGgAGCugcgggagguGGUggagauacagcugCGGGCCACg -3'
miRNA:   3'- gGUCGACGUCgUCG----------CCG-------------GCCCGGUGg -5'
27462 5' -63.1 NC_005869.1 + 18385 0.7 0.10585
Target:  5'- gCAGCUGCGGCAGCaGCagcuccuCCGCCa -3'
miRNA:   3'- gGUCGACGUCGUCGcCGgccc---GGUGG- -5'
27462 5' -63.1 NC_005869.1 + 18796 0.7 0.108843
Target:  5'- uCCGGCcGCGGCucCGGCCGcGGCU-CCg -3'
miRNA:   3'- -GGUCGaCGUCGucGCCGGC-CCGGuGG- -5'
27462 5' -63.1 NC_005869.1 + 31497 0.7 0.121624
Target:  5'- cUCAGCUcGUGGCAGC-GCCGG-CaCACCa -3'
miRNA:   3'- -GGUCGA-CGUCGUCGcCGGCCcG-GUGG- -5'
27462 5' -63.1 NC_005869.1 + 27568 0.69 0.128525
Target:  5'- uCCAGCUcccuuccccGCAGCGGCGGCaucGGCaGCg -3'
miRNA:   3'- -GGUCGA---------CGUCGUCGCCGgc-CCGgUGg -5'
27462 5' -63.1 NC_005869.1 + 16908 0.69 0.140709
Target:  5'- gCCGGUUcCAGUccuggaggcgccccuGGUGGCCaugcccgugcuccGGGCCACCa -3'
miRNA:   3'- -GGUCGAcGUCG---------------UCGCCGG-------------CCCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 9930 0.71 0.08946
Target:  5'- -gGGC-GCAGCAGCgccaGGUC-GGCCACCa -3'
miRNA:   3'- ggUCGaCGUCGUCG----CCGGcCCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 33572 0.72 0.079905
Target:  5'- gCGGCcaGCAGCAGuCGGUCguGGGCCAUg -3'
miRNA:   3'- gGUCGa-CGUCGUC-GCCGG--CCCGGUGg -5'
27462 5' -63.1 NC_005869.1 + 16666 0.72 0.079905
Target:  5'- gCGGCcGCGGCgcuggAGCGGgCGGcgGCCGCCg -3'
miRNA:   3'- gGUCGaCGUCG-----UCGCCgGCC--CGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 26190 0.78 0.025986
Target:  5'- aCCAGCacCAGCAGCaGCCGaGCCACCg -3'
miRNA:   3'- -GGUCGacGUCGUCGcCGGCcCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 24132 0.77 0.035777
Target:  5'- uUCA-CUGCAGCAGCGGCagcaGGaGCcCACCg -3'
miRNA:   3'- -GGUcGACGUCGUCGCCGg---CC-CG-GUGG- -5'
27462 5' -63.1 NC_005869.1 + 16172 0.76 0.036829
Target:  5'- -gAGCccgGCGGCAGCGG-CGGGcCCGCCc -3'
miRNA:   3'- ggUCGa--CGUCGUCGCCgGCCC-GGUGG- -5'
27462 5' -63.1 NC_005869.1 + 8522 0.74 0.054995
Target:  5'- gCGGCcucgGCGGCGGCGGCCGGucucaggcgggcaGCUggGCCa -3'
miRNA:   3'- gGUCGa---CGUCGUCGCCGGCC-------------CGG--UGG- -5'
27462 5' -63.1 NC_005869.1 + 12643 0.73 0.065299
Target:  5'- aCCGGCaGCGGCGGCuGCCGGcggcguaugcccuGaCCGCCg -3'
miRNA:   3'- -GGUCGaCGUCGUCGcCGGCC-------------C-GGUGG- -5'
27462 5' -63.1 NC_005869.1 + 24412 0.73 0.06738
Target:  5'- cCCGGC-GCAGCcGCGGa--GGCCGCCg -3'
miRNA:   3'- -GGUCGaCGUCGuCGCCggcCCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 17844 0.73 0.069328
Target:  5'- gCAGCgGCGGCAgGCGGCgGuaCCGCCg -3'
miRNA:   3'- gGUCGaCGUCGU-CGCCGgCccGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 26858 0.73 0.073387
Target:  5'- uCCAGCagaGCcGCGGCGGCCaGGaCGCCc -3'
miRNA:   3'- -GGUCGa--CGuCGUCGCCGGcCCgGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.