miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27470 3' -54.6 NC_005869.1 + 26470 1.09 0.000451
Target:  5'- cCUCCUACACCAACAGCAGCAGCAGCAa -3'
miRNA:   3'- -GAGGAUGUGGUUGUCGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 23681 0.83 0.043105
Target:  5'- gCUCCUgaGCAuCCAGCuGCAGCAGCGGCc -3'
miRNA:   3'- -GAGGA--UGU-GGUUGuCGUCGUCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 24109 0.81 0.053565
Target:  5'- cCUCCgcccacguCACCGccaccuucacuGCAGCAGCGGCAGCAg -3'
miRNA:   3'- -GAGGau------GUGGU-----------UGUCGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 12633 0.8 0.072881
Target:  5'- uUCCUGaccaACCGGCAGCGGCGGCuGCc -3'
miRNA:   3'- gAGGAUg---UGGUUGUCGUCGUCGuCGu -5'
27470 3' -54.6 NC_005869.1 + 26768 0.8 0.072881
Target:  5'- uCUCCaggaAgGCCGcaGCAGCGGCGGCAGCAg -3'
miRNA:   3'- -GAGGa---UgUGGU--UGUCGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 21597 0.79 0.077007
Target:  5'- cCUCCgcgaagggagcCACCAGgAGCAGCAGCAGCc -3'
miRNA:   3'- -GAGGau---------GUGGUUgUCGUCGUCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 26178 0.79 0.07988
Target:  5'- aUCCgcagcaGCACCAGCAcCAGCAGCAGCc -3'
miRNA:   3'- gAGGa-----UGUGGUUGUcGUCGUCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 24682 0.79 0.080861
Target:  5'- -gCCUGCGCCccccguccccgcggaGGCAGCAGCAGCAGa- -3'
miRNA:   3'- gaGGAUGUGG---------------UUGUCGUCGUCGUCgu -5'
27470 3' -54.6 NC_005869.1 + 18352 0.79 0.085938
Target:  5'- uCUCCcACGCCGuggaccgccggugcaACAGCAGCAGCuGCGg -3'
miRNA:   3'- -GAGGaUGUGGU---------------UGUCGUCGUCGuCGU- -5'
27470 3' -54.6 NC_005869.1 + 18403 0.78 0.08752
Target:  5'- gCUCCUcCGCCAGCAGCAGCAaCAGa- -3'
miRNA:   3'- -GAGGAuGUGGUUGUCGUCGUcGUCgu -5'
27470 3' -54.6 NC_005869.1 + 17825 0.75 0.14555
Target:  5'- uUCCgcgugGCGCCucggcGCAGCGGCGGCAGgCGg -3'
miRNA:   3'- gAGGa----UGUGGu----UGUCGUCGUCGUC-GU- -5'
27470 3' -54.6 NC_005869.1 + 3530 0.74 0.183629
Target:  5'- aCUCCcGCuucguUCAGCAGCAaCAGCAGCAg -3'
miRNA:   3'- -GAGGaUGu----GGUUGUCGUcGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 21807 0.73 0.2058
Target:  5'- cCUCgCU-CACCAGCAGCcGCAGCGcGCu -3'
miRNA:   3'- -GAG-GAuGUGGUUGUCGuCGUCGU-CGu -5'
27470 3' -54.6 NC_005869.1 + 1933 0.73 0.223916
Target:  5'- -gCUggugGCG-CAGCGGCAGCAGUAGCAg -3'
miRNA:   3'- gaGGa---UGUgGUUGUCGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 18205 0.72 0.23025
Target:  5'- cCUCggGCGCCAACGcCuGCAGCAGCu -3'
miRNA:   3'- -GAGgaUGUGGUUGUcGuCGUCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 22887 0.72 0.23025
Target:  5'- gUgCUGCGCgAuCAGCAGCAGCuGCGc -3'
miRNA:   3'- gAgGAUGUGgUuGUCGUCGUCGuCGU- -5'
27470 3' -54.6 NC_005869.1 + 15291 0.72 0.23025
Target:  5'- -gCCgggGCGggGGCGGCGGCGGCAGCGg -3'
miRNA:   3'- gaGGa--UGUggUUGUCGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 8517 0.72 0.25016
Target:  5'- cCUCCgcgGCCu-CGGCGGCGGCGGCc -3'
miRNA:   3'- -GAGGaugUGGuuGUCGUCGUCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 9545 0.71 0.264209
Target:  5'- uCUCCUgGCGCC-GCGGCGGC-GUGGCGg -3'
miRNA:   3'- -GAGGA-UGUGGuUGUCGUCGuCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 23034 0.71 0.264209
Target:  5'- gUCgcACACCAGCGGCaucAGCAGguGCGu -3'
miRNA:   3'- gAGgaUGUGGUUGUCG---UCGUCguCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.