miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27470 3' -54.6 NC_005869.1 + 1601 0.67 0.493202
Target:  5'- aCUCCcagcgACAUgAGCGcguGCAGCuGGCAGCGg -3'
miRNA:   3'- -GAGGa----UGUGgUUGU---CGUCG-UCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 1832 0.67 0.48992
Target:  5'- aCUCCUGaugACCGcagacgagcaugauGgAGCAGCGGCAGgAg -3'
miRNA:   3'- -GAGGAUg--UGGU--------------UgUCGUCGUCGUCgU- -5'
27470 3' -54.6 NC_005869.1 + 1915 0.66 0.572232
Target:  5'- gCUgUUGC-CCAGugggucaucCGGCAGUGGCAGCGg -3'
miRNA:   3'- -GAgGAUGuGGUU---------GUCGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 1933 0.73 0.223916
Target:  5'- -gCUggugGCG-CAGCGGCAGCAGUAGCAg -3'
miRNA:   3'- gaGGa---UGUgGUUGUCGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 2921 0.67 0.471518
Target:  5'- cCUCCgcaGCACCAuguuuguggGCGGCcGCcugGGCAGCu -3'
miRNA:   3'- -GAGGa--UGUGGU---------UGUCGuCG---UCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 3530 0.74 0.183629
Target:  5'- aCUCCcGCuucguUCAGCAGCAaCAGCAGCAg -3'
miRNA:   3'- -GAGGaUGu----GGUUGUCGUcGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 3657 0.69 0.380573
Target:  5'- --gCUGCGgCAGCAGCuGCAGgAGCu -3'
miRNA:   3'- gagGAUGUgGUUGUCGuCGUCgUCGu -5'
27470 3' -54.6 NC_005869.1 + 5425 0.68 0.429671
Target:  5'- gUCCcACAUaggugaggGGCGGUGGCAGCGGCGg -3'
miRNA:   3'- gAGGaUGUGg-------UUGUCGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 5689 0.67 0.486648
Target:  5'- --gCUGCacgaugagggcggugGCCAGCAcGUAGCGGCGGUAg -3'
miRNA:   3'- gagGAUG---------------UGGUUGU-CGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 6666 0.69 0.362011
Target:  5'- gUCCU--GCCAGCGGCGgGCGGCcagGGCGc -3'
miRNA:   3'- gAGGAugUGGUUGUCGU-CGUCG---UCGU- -5'
27470 3' -54.6 NC_005869.1 + 6782 0.67 0.471518
Target:  5'- gCUCCcGCaggagGCCGAUgaaguuggGGUAGCAGCGGCc -3'
miRNA:   3'- -GAGGaUG-----UGGUUG--------UCGUCGUCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 7404 0.69 0.39976
Target:  5'- aCUCCaGgGCCGAgaggaugucgUGGCGGUAGCGGCGc -3'
miRNA:   3'- -GAGGaUgUGGUU----------GUCGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 7609 0.66 0.537854
Target:  5'- -gCCcGCGCaGGCGGCGGCGccGCAGCu -3'
miRNA:   3'- gaGGaUGUGgUUGUCGUCGU--CGUCGu -5'
27470 3' -54.6 NC_005869.1 + 7684 0.71 0.275903
Target:  5'- gCUCCUGCGCCAGCucggcgaGGUcuggguugugggccAGCAGguGCu -3'
miRNA:   3'- -GAGGAUGUGGUUG-------UCG--------------UCGUCguCGu -5'
27470 3' -54.6 NC_005869.1 + 8289 0.7 0.335369
Target:  5'- ---gUGCGCagagguuGCAGCGGCAGUAGCAc -3'
miRNA:   3'- gaggAUGUGgu-----UGUCGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 8517 0.72 0.25016
Target:  5'- cCUCCgcgGCCu-CGGCGGCGGCGGCc -3'
miRNA:   3'- -GAGGaugUGGuuGUCGUCGUCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 9545 0.71 0.264209
Target:  5'- uCUCCUgGCGCC-GCGGCGGC-GUGGCGg -3'
miRNA:   3'- -GAGGA-UGUGGuUGUCGUCGuCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 9580 0.67 0.482301
Target:  5'- cCUCCUGCugUuGCAGC-GCuuCGGCAa -3'
miRNA:   3'- -GAGGAUGugGuUGUCGuCGucGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 9605 0.67 0.493202
Target:  5'- gCUCCgcCACCGAgGGCGccuCGGCGGCc -3'
miRNA:   3'- -GAGGauGUGGUUgUCGUc--GUCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 9632 0.66 0.572232
Target:  5'- cCUCCgcggcUGCGCCGGgGGCGGCcuccuGCAGg- -3'
miRNA:   3'- -GAGG-----AUGUGGUUgUCGUCGu----CGUCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.