Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27470 | 3' | -54.6 | NC_005869.1 | + | 19252 | 0.68 | 0.43993 |
Target: 5'- ----aGCGCUcGCAGCGGCuGCAGCu -3' miRNA: 3'- gaggaUGUGGuUGUCGUCGuCGUCGu -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 7684 | 0.71 | 0.275903 |
Target: 5'- gCUCCUGCGCCAGCucggcgaGGUcuggguugugggccAGCAGguGCu -3' miRNA: 3'- -GAGGAUGUGGUUG-------UCG--------------UCGUCguCGu -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 27578 | 0.71 | 0.30212 |
Target: 5'- uUCCccGCAgCGGCGGCAuCGGCAGCGa -3' miRNA: 3'- gAGGa-UGUgGUUGUCGUcGUCGUCGU- -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 11684 | 0.69 | 0.352969 |
Target: 5'- -cCCUuuuuaACAaCAACAGCAGCauGGCGGCGa -3' miRNA: 3'- gaGGA-----UGUgGUUGUCGUCG--UCGUCGU- -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 6666 | 0.69 | 0.362011 |
Target: 5'- gUCCU--GCCAGCGGCGgGCGGCcagGGCGc -3' miRNA: 3'- gAGGAugUGGUUGUCGU-CGUCG---UCGU- -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 3657 | 0.69 | 0.380573 |
Target: 5'- --gCUGCGgCAGCAGCuGCAGgAGCu -3' miRNA: 3'- gagGAUGUgGUUGUCGuCGUCgUCGu -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 14185 | 0.69 | 0.390089 |
Target: 5'- --aCUAC-CUGGCGGUggGGCGGCAGCAg -3' miRNA: 3'- gagGAUGuGGUUGUCG--UCGUCGUCGU- -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 22981 | 0.69 | 0.39976 |
Target: 5'- aUCUUGCAggucugccggcCCAGCAGgGGCaccuGGCGGCAg -3' miRNA: 3'- gAGGAUGU-----------GGUUGUCgUCG----UCGUCGU- -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 26998 | 0.68 | 0.419554 |
Target: 5'- --aCUGCGCU--CGGCAGCGGCAGa- -3' miRNA: 3'- gagGAUGUGGuuGUCGUCGUCGUCgu -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 23034 | 0.71 | 0.264209 |
Target: 5'- gUCgcACACCAGCGGCaucAGCAGguGCGu -3' miRNA: 3'- gAGgaUGUGGUUGUCG---UCGUCguCGU- -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 8517 | 0.72 | 0.25016 |
Target: 5'- cCUCCgcgGCCu-CGGCGGCGGCGGCc -3' miRNA: 3'- -GAGGaugUGGuuGUCGUCGUCGUCGu -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 3530 | 0.74 | 0.183629 |
Target: 5'- aCUCCcGCuucguUCAGCAGCAaCAGCAGCAg -3' miRNA: 3'- -GAGGaUGu----GGUUGUCGUcGUCGUCGU- -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 23681 | 0.83 | 0.043105 |
Target: 5'- gCUCCUgaGCAuCCAGCuGCAGCAGCGGCc -3' miRNA: 3'- -GAGGA--UGU-GGUUGuCGUCGUCGUCGu -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 24109 | 0.81 | 0.053565 |
Target: 5'- cCUCCgcccacguCACCGccaccuucacuGCAGCAGCGGCAGCAg -3' miRNA: 3'- -GAGGau------GUGGU-----------UGUCGUCGUCGUCGU- -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 12633 | 0.8 | 0.072881 |
Target: 5'- uUCCUGaccaACCGGCAGCGGCGGCuGCc -3' miRNA: 3'- gAGGAUg---UGGUUGUCGUCGUCGuCGu -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 26768 | 0.8 | 0.072881 |
Target: 5'- uCUCCaggaAgGCCGcaGCAGCGGCGGCAGCAg -3' miRNA: 3'- -GAGGa---UgUGGU--UGUCGUCGUCGUCGU- -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 26178 | 0.79 | 0.07988 |
Target: 5'- aUCCgcagcaGCACCAGCAcCAGCAGCAGCc -3' miRNA: 3'- gAGGa-----UGUGGUUGUcGUCGUCGUCGu -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 18352 | 0.79 | 0.085938 |
Target: 5'- uCUCCcACGCCGuggaccgccggugcaACAGCAGCAGCuGCGg -3' miRNA: 3'- -GAGGaUGUGGU---------------UGUCGUCGUCGuCGU- -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 18403 | 0.78 | 0.08752 |
Target: 5'- gCUCCUcCGCCAGCAGCAGCAaCAGa- -3' miRNA: 3'- -GAGGAuGUGGUUGUCGUCGUcGUCgu -5' |
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27470 | 3' | -54.6 | NC_005869.1 | + | 17825 | 0.75 | 0.14555 |
Target: 5'- uUCCgcgugGCGCCucggcGCAGCGGCGGCAGgCGg -3' miRNA: 3'- gAGGa----UGUGGu----UGUCGUCGUCGUC-GU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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