miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27470 5' -58.5 NC_005869.1 + 6503 0.66 0.429366
Target:  5'- cGCGgAGGGGCU-CGUUGg-UCCAGCa -3'
miRNA:   3'- uCGCgUCCUUGAgGCAGCagGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 9670 0.66 0.425503
Target:  5'- uGGCGCAGGAugguACUCUGgcgcagcagguggCG-CUgCAGCa -3'
miRNA:   3'- -UCGCGUCCU----UGAGGCa------------GCaGGgGUCG- -5'
27470 5' -58.5 NC_005869.1 + 9530 0.66 0.419749
Target:  5'- gGGCGCAGGuuccguuCUCCuggCG-CCgCGGCg -3'
miRNA:   3'- -UCGCGUCCuu-----GAGGca-GCaGGgGUCG- -5'
27470 5' -58.5 NC_005869.1 + 15560 0.66 0.419749
Target:  5'- aAGCGguGGcGCgCCGgaggCGgagCaCCCGGCg -3'
miRNA:   3'- -UCGCguCCuUGaGGCa---GCa--G-GGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 5759 0.66 0.389871
Target:  5'- gAGCGCAGGGGC-CgGUCGgcgaugggggugCCgCGGUc -3'
miRNA:   3'- -UCGCGUCCUUGaGgCAGCa-----------GGgGUCG- -5'
27470 5' -58.5 NC_005869.1 + 12154 0.66 0.388051
Target:  5'- uGCGCG---GCUCCGccuuaggugguggCGUUCCCGGCg -3'
miRNA:   3'- uCGCGUccuUGAGGCa------------GCAGGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 22293 0.67 0.386236
Target:  5'- gGGCGcCAGGGAggccgcgcucaccccCgccgCCGcCG-CCCCAGCu -3'
miRNA:   3'- -UCGC-GUCCUU---------------Ga---GGCaGCaGGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 33059 0.67 0.382622
Target:  5'- aGGCaGCAGGggUa----CGUCCCCAGUg -3'
miRNA:   3'- -UCG-CGUCCuuGaggcaGCAGGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 30550 0.67 0.373688
Target:  5'- uGgGCAGGGgcgcccaccACUCCGcCGUucacauucgUCCCGGCc -3'
miRNA:   3'- uCgCGUCCU---------UGAGGCaGCA---------GGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 23228 0.67 0.373688
Target:  5'- uGCGCAGcuGCaccaCGUUGcggCCCCAGCg -3'
miRNA:   3'- uCGCGUCcuUGag--GCAGCa--GGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 22996 0.67 0.364897
Target:  5'- cGGCccaGCAGGGGCaCCuggCGgcagCCCCAGCc -3'
miRNA:   3'- -UCG---CGUCCUUGaGGca-GCa---GGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 30464 0.67 0.36142
Target:  5'- -cCGCccGGAACacagaccccgucgCCGcCGUCCCCGGCu -3'
miRNA:   3'- ucGCGu-CCUUGa------------GGCaGCAGGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 17573 0.67 0.347747
Target:  5'- aGGCGguGG-GCU-CGUCGgcgggCgCCCGGCg -3'
miRNA:   3'- -UCGCguCCuUGAgGCAGCa----G-GGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 21640 0.67 0.347747
Target:  5'- gGGCGUcagcagggAGGAcacguGC-CCG-CGcUCCCCAGCg -3'
miRNA:   3'- -UCGCG--------UCCU-----UGaGGCaGC-AGGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 24552 0.68 0.33118
Target:  5'- uGCGCGGGGGCgCCuUCGagcugcggCCCCGGg -3'
miRNA:   3'- uCGCGUCCUUGaGGcAGCa-------GGGGUCg -5'
27470 5' -58.5 NC_005869.1 + 9090 0.68 0.33118
Target:  5'- cGGCGCAGGGucaGCU-CGUugaUGUCgCCCAGg -3'
miRNA:   3'- -UCGCGUCCU---UGAgGCA---GCAG-GGGUCg -5'
27470 5' -58.5 NC_005869.1 + 7880 0.68 0.315202
Target:  5'- cAGCGCGGcGuccagcAGCUCC-UCGUCCCCcgagaGGUg -3'
miRNA:   3'- -UCGCGUC-C------UUGAGGcAGCAGGGG-----UCG- -5'
27470 5' -58.5 NC_005869.1 + 6654 0.68 0.307434
Target:  5'- gGGUGCGaGGGCUCCGc---CCCCGGCu -3'
miRNA:   3'- -UCGCGUcCUUGAGGCagcaGGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 7080 0.69 0.277829
Target:  5'- uAGCGCAGGGuggccuggACgaugUCGUaagCGUCCCCcuGGCu -3'
miRNA:   3'- -UCGCGUCCU--------UGa---GGCA---GCAGGGG--UCG- -5'
27470 5' -58.5 NC_005869.1 + 15595 0.69 0.277829
Target:  5'- cGGCGCAGGcGCUCCG-CG---CCGGCc -3'
miRNA:   3'- -UCGCGUCCuUGAGGCaGCaggGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.