miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27470 5' -58.5 NC_005869.1 + 33059 0.67 0.382622
Target:  5'- aGGCaGCAGGggUa----CGUCCCCAGUg -3'
miRNA:   3'- -UCG-CGUCCuuGaggcaGCAGGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 32269 0.72 0.178824
Target:  5'- gAGCGCAGGGGCccaggugcCCGgccCGUgcgcucgcucaacucCCCCAGCa -3'
miRNA:   3'- -UCGCGUCCUUGa-------GGCa--GCA---------------GGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 30550 0.67 0.373688
Target:  5'- uGgGCAGGGgcgcccaccACUCCGcCGUucacauucgUCCCGGCc -3'
miRNA:   3'- uCgCGUCCU---------UGAGGCaGCA---------GGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 30464 0.67 0.36142
Target:  5'- -cCGCccGGAACacagaccccgucgCCGcCGUCCCCGGCu -3'
miRNA:   3'- ucGCGu-CCUUGa------------GGCaGCAGGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 27752 0.72 0.167418
Target:  5'- cGGCuGCGGGAGCUCC-UCGa--CCAGCa -3'
miRNA:   3'- -UCG-CGUCCUUGAGGcAGCaggGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 26508 1.12 0.000164
Target:  5'- cAGCGCAGGAACUCCGUCGUCCCCAGCg -3'
miRNA:   3'- -UCGCGUCCUUGAGGCAGCAGGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 26367 0.69 0.270792
Target:  5'- uGGCGCAGGAGCgg-Gg---CCCCGGCc -3'
miRNA:   3'- -UCGCGUCCUUGaggCagcaGGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 24638 0.7 0.225504
Target:  5'- gAGCGCuucguGGAccggcugcccuuGCgCCGgcgcCGUCCCCGGCc -3'
miRNA:   3'- -UCGCGu----CCU------------UGaGGCa---GCAGGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 24552 0.68 0.33118
Target:  5'- uGCGCGGGGGCgCCuUCGagcugcggCCCCGGg -3'
miRNA:   3'- uCGCGUCCUUGaGGcAGCa-------GGGGUCg -5'
27470 5' -58.5 NC_005869.1 + 23228 0.67 0.373688
Target:  5'- uGCGCAGcuGCaccaCGUUGcggCCCCAGCg -3'
miRNA:   3'- uCGCGUCcuUGag--GCAGCa--GGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 22996 0.67 0.364897
Target:  5'- cGGCccaGCAGGGGCaCCuggCGgcagCCCCAGCc -3'
miRNA:   3'- -UCG---CGUCCUUGaGGca-GCa---GGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 22293 0.67 0.386236
Target:  5'- gGGCGcCAGGGAggccgcgcucaccccCgccgCCGcCG-CCCCAGCu -3'
miRNA:   3'- -UCGC-GUCCUU---------------Ga---GGCaGCaGGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 21640 0.67 0.347747
Target:  5'- gGGCGUcagcagggAGGAcacguGC-CCG-CGcUCCCCAGCg -3'
miRNA:   3'- -UCGCG--------UCCU-----UGaGGCaGC-AGGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 21356 0.73 0.149853
Target:  5'- uAGCGCAGGAugcGCUCC----UCCUCGGCg -3'
miRNA:   3'- -UCGCGUCCU---UGAGGcagcAGGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 18853 0.7 0.2138
Target:  5'- gAGCGCAGGc---CCa--GUCCCCAGCc -3'
miRNA:   3'- -UCGCGUCCuugaGGcagCAGGGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 17929 0.74 0.125569
Target:  5'- uGCuGCAGGAugUCCGuguccgcauacaacUCGUCCCagAGCg -3'
miRNA:   3'- uCG-CGUCCUugAGGC--------------AGCAGGGg-UCG- -5'
27470 5' -58.5 NC_005869.1 + 17573 0.67 0.347747
Target:  5'- aGGCGguGG-GCU-CGUCGgcgggCgCCCGGCg -3'
miRNA:   3'- -UCGCguCCuUGAgGCAGCa----G-GGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 16673 0.71 0.202621
Target:  5'- cGGCGCuGGAGCgggcggcggCCGcCGUgCCCCuGCc -3'
miRNA:   3'- -UCGCGuCCUUGa--------GGCaGCA-GGGGuCG- -5'
27470 5' -58.5 NC_005869.1 + 15595 0.69 0.277829
Target:  5'- cGGCGCAGGcGCUCCG-CG---CCGGCc -3'
miRNA:   3'- -UCGCGUCCuUGAGGCaGCaggGGUCG- -5'
27470 5' -58.5 NC_005869.1 + 15560 0.66 0.419749
Target:  5'- aAGCGguGGcGCgCCGgaggCGgagCaCCCGGCg -3'
miRNA:   3'- -UCGCguCCuUGaGGCa---GCa--G-GGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.