miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27471 3' -61.1 NC_005869.1 + 6115 0.66 0.279396
Target:  5'- -cGCGGUGGCGGCGGucGCUguAGCgCGu -3'
miRNA:   3'- guCGCCGCCGUCGUCu-UGG--UCGgGUg -5'
27471 3' -61.1 NC_005869.1 + 30177 0.68 0.177714
Target:  5'- uGGUGGUGGCGGCuGGGCU--UCCACu -3'
miRNA:   3'- gUCGCCGCCGUCGuCUUGGucGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 9646 0.69 0.150505
Target:  5'- cCGGgGGCGGCcuccuGCAGGACCuGGCgCAg -3'
miRNA:   3'- -GUCgCCGCCGu----CGUCUUGG-UCGgGUg -5'
27471 3' -61.1 NC_005869.1 + 5512 0.74 0.071455
Target:  5'- uGGCGGUGaGCAGgAGGAUgaGGCCCACc -3'
miRNA:   3'- gUCGCCGC-CGUCgUCUUGg-UCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 17484 0.66 0.272308
Target:  5'- gGGCGGCguGGguGCuGGAGCgggCGGCuCCACc -3'
miRNA:   3'- gUCGCCG--CCguCG-UCUUG---GUCG-GGUG- -5'
27471 3' -61.1 NC_005869.1 + 17348 0.66 0.265365
Target:  5'- cCGGUGGCaggGGCacGGCGGccGCC-GCCCGCu -3'
miRNA:   3'- -GUCGCCG---CCG--UCGUCu-UGGuCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 31980 0.66 0.258566
Target:  5'- gGGcCGGCGGCGaucuaaacCAGAuCCGGCCCu- -3'
miRNA:   3'- gUC-GCCGCCGUc-------GUCUuGGUCGGGug -5'
27471 3' -61.1 NC_005869.1 + 21627 0.66 0.258566
Target:  5'- gCAGCcggguguugGGCGuCAGCAGGgaggacACguGCCCGCg -3'
miRNA:   3'- -GUCG---------CCGCcGUCGUCU------UGguCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 15335 0.67 0.232171
Target:  5'- gAGCGGCGGCGGgGGGcgcAUCuuauuguGGgCCACg -3'
miRNA:   3'- gUCGCCGCCGUCgUCU---UGG-------UCgGGUG- -5'
27471 3' -61.1 NC_005869.1 + 18558 0.68 0.177714
Target:  5'- aCGGCGccGCGcGCGGCGGcGCCGGgCUACc -3'
miRNA:   3'- -GUCGC--CGC-CGUCGUCuUGGUCgGGUG- -5'
27471 3' -61.1 NC_005869.1 + 32233 0.67 0.217216
Target:  5'- aUAGUGGCGGCAcCAGAagACuuaaaauacccucguCAGUCCACc -3'
miRNA:   3'- -GUCGCCGCCGUcGUCU--UG---------------GUCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 6276 0.67 0.239022
Target:  5'- uGGCGGCGGUgcuGGUcgaGGAGCU--CCCGCa -3'
miRNA:   3'- gUCGCCGCCG---UCG---UCUUGGucGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 26363 0.66 0.279396
Target:  5'- gAGCuGGCGcaGgAGCGGGGCCccGGCCUGCc -3'
miRNA:   3'- gUCG-CCGC--CgUCGUCUUGG--UCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 31084 0.67 0.214901
Target:  5'- gCAGCGGCuGgGGCuGAAgCuGCCCAg -3'
miRNA:   3'- -GUCGCCGcCgUCGuCUUgGuCGGGUg -5'
27471 3' -61.1 NC_005869.1 + 17093 0.66 0.279396
Target:  5'- gGGCGGUGGUGGCccGGAGCacgGGCauggCCACc -3'
miRNA:   3'- gUCGCCGCCGUCG--UCUUGg--UCG----GGUG- -5'
27471 3' -61.1 NC_005869.1 + 8268 0.66 0.245396
Target:  5'- uGGUGGCgaGGCAGC-GGugCGGUgCGCa -3'
miRNA:   3'- gUCGCCG--CCGUCGuCUugGUCGgGUG- -5'
27471 3' -61.1 NC_005869.1 + 7353 0.68 0.192898
Target:  5'- -uGUGGUGGUagAGUAGGuACCGGCgCACg -3'
miRNA:   3'- guCGCCGCCG--UCGUCU-UGGUCGgGUG- -5'
27471 3' -61.1 NC_005869.1 + 7425 0.69 0.16819
Target:  5'- -cGUGGCGGUAGCGGcGCCAggagcGUCgGCg -3'
miRNA:   3'- guCGCCGCCGUCGUCuUGGU-----CGGgUG- -5'
27471 3' -61.1 NC_005869.1 + 12819 0.66 0.279396
Target:  5'- gAGCaGGCGGUcauuGCccGGCCAGgCCACg -3'
miRNA:   3'- gUCG-CCGCCGu---CGucUUGGUCgGGUG- -5'
27471 3' -61.1 NC_005869.1 + 2351 0.66 0.264678
Target:  5'- uGGUGGUucagggaGGCGGU-GAACCuGCCCAg -3'
miRNA:   3'- gUCGCCG-------CCGUCGuCUUGGuCGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.