Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27479 | 3' | -58.6 | NC_005869.1 | + | 29600 | 0.71 | 0.194096 |
Target: 5'- cCCGCCGCgaccagaGCGGCAaCAUCUCCa -3' miRNA: 3'- -GGCGGCGaaca---CGUCGUgGUGGAGGg -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 13671 | 0.71 | 0.204851 |
Target: 5'- gCCGCCGCag--GgAGCGUCGCCUCCg -3' miRNA: 3'- -GGCGGCGaacaCgUCGUGGUGGAGGg -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 11294 | 0.71 | 0.204851 |
Target: 5'- -gGCCGCccUGaUGCAGaCGCgGCCUCCa -3' miRNA: 3'- ggCGGCGa-AC-ACGUC-GUGgUGGAGGg -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 26436 | 0.7 | 0.210421 |
Target: 5'- gCCGCCGCcUGcGCGG-GCCGCC-CCUc -3' miRNA: 3'- -GGCGGCGaACaCGUCgUGGUGGaGGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 11734 | 0.7 | 0.221951 |
Target: 5'- gCgGCgGCggggGUG-AGCGCgGCCUCCCu -3' miRNA: 3'- -GgCGgCGaa--CACgUCGUGgUGGAGGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 22592 | 0.7 | 0.234014 |
Target: 5'- gCCGCCGCgagGUGCuG-ACCACgcgCUCCa -3' miRNA: 3'- -GGCGGCGaa-CACGuCgUGGUG---GAGGg -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 15485 | 0.7 | 0.234014 |
Target: 5'- gCCGCCGCgc--GCGGCGCCGuuCUUCgCg -3' miRNA: 3'- -GGCGGCGaacaCGUCGUGGU--GGAGgG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 18109 | 0.7 | 0.234014 |
Target: 5'- aCCcCCGCUUG-GCcuuGCGCCGCUUCUUc -3' miRNA: 3'- -GGcGGCGAACaCGu--CGUGGUGGAGGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 17209 | 0.69 | 0.245339 |
Target: 5'- aCCGCCacggGCggcagUGgggucuguacggGCAGgGCCACCUCCg -3' miRNA: 3'- -GGCGG----CGa----ACa-----------CGUCgUGGUGGAGGg -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 15996 | 0.69 | 0.246624 |
Target: 5'- gCGCCGCUggacgGgGCGGCGcgugcgcgcCCACCUaccgCCCg -3' miRNA: 3'- gGCGGCGAa----CaCGUCGU---------GGUGGA----GGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 23873 | 0.69 | 0.246624 |
Target: 5'- uCCGCCGCUccUGcacggGCGgagaggccgcGCGCUugcgGCCUCCCc -3' miRNA: 3'- -GGCGGCGA--ACa----CGU----------CGUGG----UGGAGGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 25750 | 0.69 | 0.253138 |
Target: 5'- aCUGCCGCUgcaaccucUGcGCAccGCACCgcuGCCUCgCCa -3' miRNA: 3'- -GGCGGCGA--------ACaCGU--CGUGG---UGGAG-GG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 21753 | 0.69 | 0.253138 |
Target: 5'- gCGCCGCcugcaggaaggUGUGCGGCcCCgagcggaacACCUCCg -3' miRNA: 3'- gGCGGCGa----------ACACGUCGuGG---------UGGAGGg -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 10453 | 0.69 | 0.259121 |
Target: 5'- aCGCUGCUgccGgacgGCAGCACCcuggaguGCUUCCg -3' miRNA: 3'- gGCGGCGAa--Ca---CGUCGUGG-------UGGAGGg -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 16669 | 0.69 | 0.259792 |
Target: 5'- gCCGCgGCgcUGgagcggGCGGCgGCCGCCgugCCCc -3' miRNA: 3'- -GGCGgCGa-ACa-----CGUCG-UGGUGGa--GGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 16599 | 0.69 | 0.266589 |
Target: 5'- aCCGCCGCggGcGCcGgGCCACCggaaCCa -3' miRNA: 3'- -GGCGGCGaaCaCGuCgUGGUGGag--GG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 8131 | 0.69 | 0.280612 |
Target: 5'- gCgGCCGCa-GUGCucGCACUucuggGCCUCCUg -3' miRNA: 3'- -GgCGGCGaaCACGu-CGUGG-----UGGAGGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 13119 | 0.68 | 0.28784 |
Target: 5'- gUGUCGUUgc-GCAGCAUgGCCUCCa -3' miRNA: 3'- gGCGGCGAacaCGUCGUGgUGGAGGg -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 11010 | 0.68 | 0.28784 |
Target: 5'- aUGCCGCUggUGUGCgacugcggcuggGGCuGCCGCCaggugCCCc -3' miRNA: 3'- gGCGGCGA--ACACG------------UCG-UGGUGGa----GGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 26538 | 0.68 | 0.28784 |
Target: 5'- aCCGCCGCga--GguGCcCC-CCUCCUu -3' miRNA: 3'- -GGCGGCGaacaCguCGuGGuGGAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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