miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27479 3' -58.6 NC_005869.1 + 32110 0.66 0.404347
Target:  5'- gCUGCCGC---UGCGcCACCAgCUCCa -3'
miRNA:   3'- -GGCGGCGaacACGUcGUGGUgGAGGg -5'
27479 3' -58.6 NC_005869.1 + 32071 0.71 0.183837
Target:  5'- cCCGCgggCGCUUG---GGCACCACCuggUCCCg -3'
miRNA:   3'- -GGCG---GCGAACacgUCGUGGUGG---AGGG- -5'
27479 3' -58.6 NC_005869.1 + 31668 0.71 0.188905
Target:  5'- aCGCgacucaCGCUgg-GCAGguuCACCGCCUCCCu -3'
miRNA:   3'- gGCG------GCGAacaCGUC---GUGGUGGAGGG- -5'
27479 3' -58.6 NC_005869.1 + 30992 1.14 0.000113
Target:  5'- cCCGCCGCUUGUGCAGCACCACCUCCCg -3'
miRNA:   3'- -GGCGGCGAACACGUCGUGGUGGAGGG- -5'
27479 3' -58.6 NC_005869.1 + 30406 0.67 0.368173
Target:  5'- uCCGCCaGCgccUGCcGCAucaugcCCACCUCCg -3'
miRNA:   3'- -GGCGG-CGaacACGuCGU------GGUGGAGGg -5'
27479 3' -58.6 NC_005869.1 + 30345 0.73 0.139453
Target:  5'- -gGCCGUggcccGCAGCuguaucuccACCACCUCCCg -3'
miRNA:   3'- ggCGGCGaaca-CGUCG---------UGGUGGAGGG- -5'
27479 3' -58.6 NC_005869.1 + 30280 0.66 0.431936
Target:  5'- gCGCCG-------GGCGCCACCUCCUc -3'
miRNA:   3'- gGCGGCgaacacgUCGUGGUGGAGGG- -5'
27479 3' -58.6 NC_005869.1 + 29600 0.71 0.194096
Target:  5'- cCCGCCGCgaccagaGCGGCAaCAUCUCCa -3'
miRNA:   3'- -GGCGGCGaaca---CGUCGUgGUGGAGGg -5'
27479 3' -58.6 NC_005869.1 + 28467 0.71 0.188905
Target:  5'- cCUGCCGCUUcgaggagaugGUGUucuacuaCACCACCUCCg -3'
miRNA:   3'- -GGCGGCGAA----------CACGuc-----GUGGUGGAGGg -5'
27479 3' -58.6 NC_005869.1 + 28335 0.75 0.093715
Target:  5'- aCCGCCGCUacGUGCuGGcCACCGCC-CUCa -3'
miRNA:   3'- -GGCGGCGAa-CACG-UC-GUGGUGGaGGG- -5'
27479 3' -58.6 NC_005869.1 + 27777 0.67 0.368173
Target:  5'- aCCGCCGCcaGUGCccuaaccGCugCugCUUCg -3'
miRNA:   3'- -GGCGGCGaaCACGu------CGugGugGAGGg -5'
27479 3' -58.6 NC_005869.1 + 27380 0.8 0.041362
Target:  5'- cCCGCCGCUg--GCAGgACCGCCUCg- -3'
miRNA:   3'- -GGCGGCGAacaCGUCgUGGUGGAGgg -5'
27479 3' -58.6 NC_005869.1 + 26538 0.68 0.28784
Target:  5'- aCCGCCGCga--GguGCcCC-CCUCCUu -3'
miRNA:   3'- -GGCGGCGaacaCguCGuGGuGGAGGG- -5'
27479 3' -58.6 NC_005869.1 + 26436 0.7 0.210421
Target:  5'- gCCGCCGCcUGcGCGG-GCCGCC-CCUc -3'
miRNA:   3'- -GGCGGCGaACaCGUCgUGGUGGaGGG- -5'
27479 3' -58.6 NC_005869.1 + 26000 0.67 0.377006
Target:  5'- aCgGCCGaCUgGUgGCAGacCAUCGCCUUCCg -3'
miRNA:   3'- -GgCGGC-GAaCA-CGUC--GUGGUGGAGGG- -5'
27479 3' -58.6 NC_005869.1 + 25814 0.66 0.404347
Target:  5'- cCCGCC-CgagGgcccGCcGCcCCGCCUCCCc -3'
miRNA:   3'- -GGCGGcGaa-Ca---CGuCGuGGUGGAGGG- -5'
27479 3' -58.6 NC_005869.1 + 25750 0.69 0.253138
Target:  5'- aCUGCCGCUgcaaccucUGcGCAccGCACCgcuGCCUCgCCa -3'
miRNA:   3'- -GGCGGCGA--------ACaCGU--CGUGG---UGGAG-GG- -5'
27479 3' -58.6 NC_005869.1 + 25722 0.66 0.395095
Target:  5'- aCCGCgGUggagcUG-GCccGCGCCGCCgggCCCa -3'
miRNA:   3'- -GGCGgCGa----ACaCGu-CGUGGUGGa--GGG- -5'
27479 3' -58.6 NC_005869.1 + 25418 0.72 0.157627
Target:  5'- aCCGCCGCgucaucGcccacgccucgcgucUGCGccGCgACCACCUCCCg -3'
miRNA:   3'- -GGCGGCGaa----C---------------ACGU--CG-UGGUGGAGGG- -5'
27479 3' -58.6 NC_005869.1 + 25053 0.73 0.132215
Target:  5'- aCCGCCGCcugcauggucacgGUGCAGCuccacugcaugcacACCuuccucACCUCCCg -3'
miRNA:   3'- -GGCGGCGaa-----------CACGUCG--------------UGG------UGGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.