miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27480 5' -55.5 NC_005869.1 + 14227 0.65 0.575778
Target:  5'- aCAUCGGGGugaagaucgacacGCGCAaCuuCCGCCUGg -3'
miRNA:   3'- cGUAGUCCCu------------CGCGUaGu-GGUGGACg -5'
27480 5' -55.5 NC_005869.1 + 16635 0.66 0.569007
Target:  5'- cGCG-CGGGGuggGGgGCAcCACCGCCgucaGCc -3'
miRNA:   3'- -CGUaGUCCC---UCgCGUaGUGGUGGa---CG- -5'
27480 5' -55.5 NC_005869.1 + 8952 0.66 0.569007
Target:  5'- gGCGUCccGcGcGCGCAUgACUACCUGg -3'
miRNA:   3'- -CGUAGucC-CuCGCGUAgUGGUGGACg -5'
27480 5' -55.5 NC_005869.1 + 17008 0.66 0.569007
Target:  5'- aGCAcgggCAGGGAuaccGUGCGggGCUGCCUGg -3'
miRNA:   3'- -CGUa---GUCCCU----CGCGUagUGGUGGACg -5'
27480 5' -55.5 NC_005869.1 + 8969 0.66 0.569007
Target:  5'- uGCAUgCAGuGGAGUGCAcCGugACCaUGCa -3'
miRNA:   3'- -CGUA-GUC-CCUCGCGUaGUggUGG-ACG- -5'
27480 5' -55.5 NC_005869.1 + 14448 0.66 0.557767
Target:  5'- ---gCGGGGGGCaaCAUCcCCGCgCUGCu -3'
miRNA:   3'- cguaGUCCCUCGc-GUAGuGGUG-GACG- -5'
27480 5' -55.5 NC_005869.1 + 9208 0.66 0.553289
Target:  5'- ---cCAGGGcGGCGauggccucggcCACCGCCUGCc -3'
miRNA:   3'- cguaGUCCC-UCGCgua--------GUGGUGGACG- -5'
27480 5' -55.5 NC_005869.1 + 1463 0.66 0.546592
Target:  5'- ---gCGGGGAGUGCcuaGCCGCUcGCu -3'
miRNA:   3'- cguaGUCCCUCGCGuagUGGUGGaCG- -5'
27480 5' -55.5 NC_005869.1 + 25759 0.66 0.535489
Target:  5'- uCGUcCAGGuGGUcacccgccaGCAaCACCACCUGCa -3'
miRNA:   3'- cGUA-GUCCcUCG---------CGUaGUGGUGGACG- -5'
27480 5' -55.5 NC_005869.1 + 30844 0.66 0.528865
Target:  5'- uGCAgcucacCAGGGAccggggggcccgcaGCGCGUCugucacuuucaucuGCCgcACCUGCg -3'
miRNA:   3'- -CGUa-----GUCCCU--------------CGCGUAG--------------UGG--UGGACG- -5'
27480 5' -55.5 NC_005869.1 + 5448 0.67 0.513531
Target:  5'- gGCAgCGGcGGGGCGCGguuCCugCUGg -3'
miRNA:   3'- -CGUaGUC-CCUCGCGUaguGGugGACg -5'
27480 5' -55.5 NC_005869.1 + 25025 0.67 0.513531
Target:  5'- -gGUCcuGGaGGAGCGgcgcaagacCGUCACCgccGCCUGCa -3'
miRNA:   3'- cgUAG--UC-CCUCGC---------GUAGUGG---UGGACG- -5'
27480 5' -55.5 NC_005869.1 + 1866 0.67 0.49195
Target:  5'- uGCggCAGGGGcuGUGCAUCAUCAggaUGCc -3'
miRNA:   3'- -CGuaGUCCCU--CGCGUAGUGGUgg-ACG- -5'
27480 5' -55.5 NC_005869.1 + 14963 0.67 0.49195
Target:  5'- gGCAUCAu-GAcgGCGUCGCCAuCCUGCg -3'
miRNA:   3'- -CGUAGUccCUcgCGUAGUGGU-GGACG- -5'
27480 5' -55.5 NC_005869.1 + 15617 0.67 0.481317
Target:  5'- cCAUCcuGGGGGUGCGccgcagcCGCCGCCUccGCa -3'
miRNA:   3'- cGUAGu-CCCUCGCGUa------GUGGUGGA--CG- -5'
27480 5' -55.5 NC_005869.1 + 30211 0.67 0.481317
Target:  5'- aGUcUCAGGGAGCGCAggcaucucuuUCaACUACUccaGCa -3'
miRNA:   3'- -CGuAGUCCCUCGCGU----------AG-UGGUGGa--CG- -5'
27480 5' -55.5 NC_005869.1 + 11428 0.67 0.481317
Target:  5'- cGCAacaagCGGcuGGAGCGCgugGUCAgCACCUcGCg -3'
miRNA:   3'- -CGUa----GUC--CCUCGCG---UAGUgGUGGA-CG- -5'
27480 5' -55.5 NC_005869.1 + 29488 0.67 0.481317
Target:  5'- aGUcUCAGGGAGCGCAggcaucucuuUCaACUACUccaGCa -3'
miRNA:   3'- -CGuAGUCCCUCGCGU----------AG-UGGUGGa--CG- -5'
27480 5' -55.5 NC_005869.1 + 10951 0.67 0.48026
Target:  5'- cGCGgcgCGGGcccacauGAGCGCG--GCCGCCUGg -3'
miRNA:   3'- -CGUa--GUCC-------CUCGCGUagUGGUGGACg -5'
27480 5' -55.5 NC_005869.1 + 7845 0.67 0.470797
Target:  5'- aGCGcugCAGGcGGGCuCuggacggcCACCACCUGCa -3'
miRNA:   3'- -CGUa--GUCC-CUCGcGua------GUGGUGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.