Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27481 | 3' | -55.5 | NC_005869.1 | + | 32254 | 1.13 | 0.000238 |
Target: 5'- cGCAGAGAGAACAUGGAGCGCAGGGGCc -3' miRNA: 3'- -CGUCUCUCUUGUACCUCGCGUCCCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 55 | 0.77 | 0.11885 |
Target: 5'- gGCGGAGAGggU-UGGGG-GCGGcGGGCg -3' miRNA: 3'- -CGUCUCUCuuGuACCUCgCGUC-CCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 55 | 0.77 | 0.11885 |
Target: 5'- gGCGGAGAGggU-UGGGG-GCGGcGGGCg -3' miRNA: 3'- -CGUCUCUCuuGuACCUCgCGUC-CCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 2617 | 0.74 | 0.177544 |
Target: 5'- gGCGGcGGAGGcCAUcGGGGCGCAGcGGCg -3' miRNA: 3'- -CGUC-UCUCUuGUA-CCUCGCGUCcCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 21647 | 0.73 | 0.204118 |
Target: 5'- aGCAGGGAGGACAcgUGcccGCGCuccccagcGGGGGCc -3' miRNA: 3'- -CGUCUCUCUUGU--ACcu-CGCG--------UCCCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 2688 | 0.73 | 0.209253 |
Target: 5'- gGCAGAG-GGACGcGGAGCgggaggaggagagGCAGaGGGCc -3' miRNA: 3'- -CGUCUCuCUUGUaCCUCG-------------CGUC-CCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 5721 | 0.73 | 0.21568 |
Target: 5'- cGCGGGuGAGGAagaggcugucggUGUccccguagacGGAGCGCAGGGGCc -3' miRNA: 3'- -CGUCU-CUCUU------------GUA----------CCUCGCGUCCCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 15314 | 0.72 | 0.234072 |
Target: 5'- aGCGGAgGAGGugGUGGuggugagcggcGGCG-GGGGGCg -3' miRNA: 3'- -CGUCU-CUCUugUACC-----------UCGCgUCCCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 7894 | 0.72 | 0.240489 |
Target: 5'- cCGGAGGGGcgGCAUGGuGgGCGguggacGGGGCg -3' miRNA: 3'- cGUCUCUCU--UGUACCuCgCGU------CCCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 8205 | 0.72 | 0.240489 |
Target: 5'- gGCGGAGGGGGaaggGGAG-GC-GGGGCg -3' miRNA: 3'- -CGUCUCUCUUgua-CCUCgCGuCCCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 31169 | 0.71 | 0.265516 |
Target: 5'- gGCAGGcGAGAcgagGGAGCGaugugcaccgugcuCAGGGGCa -3' miRNA: 3'- -CGUCU-CUCUuguaCCUCGC--------------GUCCCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 7118 | 0.71 | 0.265516 |
Target: 5'- cGCGGuGAuacagacagcucuuGGugAgGGAGCGCAGGGuGCg -3' miRNA: 3'- -CGUCuCU--------------CUugUaCCUCGCGUCCC-CG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 1844 | 0.71 | 0.28958 |
Target: 5'- cGCAGAcGAGcAugAUGGAGCagcgGCAGGaGGa -3' miRNA: 3'- -CGUCU-CUC-UugUACCUCG----CGUCC-CCg -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 5434 | 0.71 | 0.297203 |
Target: 5'- aGguGAGGGGcgGUGGcAGCgGCGGGGcGCg -3' miRNA: 3'- -CguCUCUCUugUACC-UCG-CGUCCC-CG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 4219 | 0.7 | 0.329244 |
Target: 5'- uGCAGguaaagccacuGGAGGGC-UGG-GUGCGGGGGg -3' miRNA: 3'- -CGUC-----------UCUCUUGuACCuCGCGUCCCCg -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 20707 | 0.7 | 0.329244 |
Target: 5'- cCAGGGAgGAGCG-GGAgGCGCGGcGGCg -3' miRNA: 3'- cGUCUCU-CUUGUaCCU-CGCGUCcCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 2091 | 0.69 | 0.354903 |
Target: 5'- gGUGGAGAGGggaGCggGGAGgagGCGGGGGg -3' miRNA: 3'- -CGUCUCUCU---UGuaCCUCg--CGUCCCCg -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 3680 | 0.69 | 0.354903 |
Target: 5'- uGCGG-GAGGugGUGGAGauacaGCuGcGGGCc -3' miRNA: 3'- -CGUCuCUCUugUACCUCg----CGuC-CCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 10918 | 0.69 | 0.363764 |
Target: 5'- --uGAGGGGcGCGUGGAGgagGCGGGGGg -3' miRNA: 3'- cguCUCUCU-UGUACCUCg--CGUCCCCg -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 15257 | 0.69 | 0.363764 |
Target: 5'- cGCGGccGGAcgccgacgcACA-GGAGcCGCGGGGGCc -3' miRNA: 3'- -CGUCucUCU---------UGUaCCUC-GCGUCCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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