miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27481 3' -55.5 NC_005869.1 + 14171 0.66 0.535489
Target:  5'- cGCGaucguGGAGAACuaccuggcgGUGGGGCggcaGCAGGGGg -3'
miRNA:   3'- -CGUc----UCUCUUG---------UACCUCG----CGUCCCCg -5'
27481 3' -55.5 NC_005869.1 + 5454 0.68 0.439965
Target:  5'- -aGGAGAGGuguugggugGCAUGGcccuuGGCGCGgagcuugccGGGGCc -3'
miRNA:   3'- cgUCUCUCU---------UGUACC-----UCGCGU---------CCCCG- -5'
27481 3' -55.5 NC_005869.1 + 178 0.68 0.439965
Target:  5'- -aGGGGAaGGgGUGGAGCcCuGGGGCg -3'
miRNA:   3'- cgUCUCUcUUgUACCUCGcGuCCCCG- -5'
27481 3' -55.5 NC_005869.1 + 6524 0.68 0.439965
Target:  5'- aGCAGAGGcGGCcgcccuugcgGGAGCaGUAGGGGg -3'
miRNA:   3'- -CGUCUCUcUUGua--------CCUCG-CGUCCCCg -5'
27481 3' -55.5 NC_005869.1 + 5068 0.67 0.481317
Target:  5'- -gGGAGAGGAgGUGGgagagggaGGCGaaggccuugAGGGGCu -3'
miRNA:   3'- cgUCUCUCUUgUACC--------UCGCg--------UCCCCG- -5'
27481 3' -55.5 NC_005869.1 + 33063 0.67 0.496233
Target:  5'- aGCAGGGguacguccccagugaGGGACAccUGGA-UGgGGGGGCa -3'
miRNA:   3'- -CGUCUC---------------UCUUGU--ACCUcGCgUCCCCG- -5'
27481 3' -55.5 NC_005869.1 + 13934 0.67 0.517893
Target:  5'- -uGGAGGcGAGCAcgcagaccaucaaccUGGAugagcgcuGCGCuGGGGCg -3'
miRNA:   3'- cgUCUCU-CUUGU---------------ACCU--------CGCGuCCCCG- -5'
27481 3' -55.5 NC_005869.1 + 3621 0.66 0.535489
Target:  5'- cGCGGAGGuGGGCAUGauGCGgCAGGcgcuGGCg -3'
miRNA:   3'- -CGUCUCU-CUUGUACcuCGC-GUCC----CCG- -5'
27481 3' -55.5 NC_005869.1 + 10705 0.66 0.535489
Target:  5'- -gGGGGAGGGCcUGGcgcggcugucgGGCGCGGcGGCc -3'
miRNA:   3'- cgUCUCUCUUGuACC-----------UCGCGUCcCCG- -5'
27481 3' -55.5 NC_005869.1 + 8354 0.68 0.429946
Target:  5'- uGCAG-GAGGuCGggggGcGGGCGCAGGaGGUg -3'
miRNA:   3'- -CGUCuCUCUuGUa---C-CUCGCGUCC-CCG- -5'
27481 3' -55.5 NC_005869.1 + 9361 0.69 0.400712
Target:  5'- ----cGGGGACggGGGGCGCAGGccggggacGGCg -3'
miRNA:   3'- cgucuCUCUUGuaCCUCGCGUCC--------CCG- -5'
27481 3' -55.5 NC_005869.1 + 1836 0.69 0.388444
Target:  5'- uGCuGGAGgcgcgaaugauggcGGAGCA-GGuGCgGCAGGGGCu -3'
miRNA:   3'- -CG-UCUC--------------UCUUGUaCCuCG-CGUCCCCG- -5'
27481 3' -55.5 NC_005869.1 + 55 0.77 0.11885
Target:  5'- gGCGGAGAGggU-UGGGG-GCGGcGGGCg -3'
miRNA:   3'- -CGUCUCUCuuGuACCUCgCGUC-CCCG- -5'
27481 3' -55.5 NC_005869.1 + 5721 0.73 0.21568
Target:  5'- cGCGGGuGAGGAagaggcugucggUGUccccguagacGGAGCGCAGGGGCc -3'
miRNA:   3'- -CGUCU-CUCUU------------GUA----------CCUCGCGUCCCCG- -5'
27481 3' -55.5 NC_005869.1 + 8205 0.72 0.240489
Target:  5'- gGCGGAGGGGGaaggGGAG-GC-GGGGCg -3'
miRNA:   3'- -CGUCUCUCUUgua-CCUCgCGuCCCCG- -5'
27481 3' -55.5 NC_005869.1 + 4219 0.7 0.329244
Target:  5'- uGCAGguaaagccacuGGAGGGC-UGG-GUGCGGGGGg -3'
miRNA:   3'- -CGUC-----------UCUCUUGuACCuCGCGUCCCCg -5'
27481 3' -55.5 NC_005869.1 + 2091 0.69 0.354903
Target:  5'- gGUGGAGAGGggaGCggGGAGgagGCGGGGGg -3'
miRNA:   3'- -CGUCUCUCU---UGuaCCUCg--CGUCCCCg -5'
27481 3' -55.5 NC_005869.1 + 3680 0.69 0.354903
Target:  5'- uGCGG-GAGGugGUGGAGauacaGCuGcGGGCc -3'
miRNA:   3'- -CGUCuCUCUugUACCUCg----CGuC-CCCG- -5'
27481 3' -55.5 NC_005869.1 + 10918 0.69 0.363764
Target:  5'- --uGAGGGGcGCGUGGAGgagGCGGGGGg -3'
miRNA:   3'- cguCUCUCU-UGUACCUCg--CGUCCCCg -5'
27481 3' -55.5 NC_005869.1 + 17816 0.69 0.372777
Target:  5'- cGCGGuGGGuuccGCGUGGcgccucGGCGCAGcGGCg -3'
miRNA:   3'- -CGUCuCUCu---UGUACC------UCGCGUCcCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.