Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27481 | 3' | -55.5 | NC_005869.1 | + | 55 | 0.77 | 0.11885 |
Target: 5'- gGCGGAGAGggU-UGGGG-GCGGcGGGCg -3' miRNA: 3'- -CGUCUCUCuuGuACCUCgCGUC-CCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 55 | 0.77 | 0.11885 |
Target: 5'- gGCGGAGAGggU-UGGGG-GCGGcGGGCg -3' miRNA: 3'- -CGUCUCUCuuGuACCUCgCGUC-CCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 178 | 0.68 | 0.439965 |
Target: 5'- -aGGGGAaGGgGUGGAGCcCuGGGGCg -3' miRNA: 3'- cgUCUCUcUUgUACCUCGcGuCCCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 1836 | 0.69 | 0.388444 |
Target: 5'- uGCuGGAGgcgcgaaugauggcGGAGCA-GGuGCgGCAGGGGCu -3' miRNA: 3'- -CG-UCUC--------------UCUUGUaCCuCG-CGUCCCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 1844 | 0.71 | 0.28958 |
Target: 5'- cGCAGAcGAGcAugAUGGAGCagcgGCAGGaGGa -3' miRNA: 3'- -CGUCU-CUC-UugUACCUCG----CGUCC-CCg -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 2091 | 0.69 | 0.354903 |
Target: 5'- gGUGGAGAGGggaGCggGGAGgagGCGGGGGg -3' miRNA: 3'- -CGUCUCUCU---UGuaCCUCg--CGUCCCCg -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 2617 | 0.74 | 0.177544 |
Target: 5'- gGCGGcGGAGGcCAUcGGGGCGCAGcGGCg -3' miRNA: 3'- -CGUC-UCUCUuGUA-CCUCGCGUCcCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 2688 | 0.73 | 0.209253 |
Target: 5'- gGCAGAG-GGACGcGGAGCgggaggaggagagGCAGaGGGCc -3' miRNA: 3'- -CGUCUCuCUUGUaCCUCG-------------CGUC-CCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 3064 | 0.68 | 0.429946 |
Target: 5'- gGCGGgaGGAGAacacauacagaaACAUGGAGCGggugguguacCGGGuGGCc -3' miRNA: 3'- -CGUC--UCUCU------------UGUACCUCGC----------GUCC-CCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 3172 | 0.67 | 0.501611 |
Target: 5'- aGCAGAaggucccGuAGGAgGUGGAGaa-GGGGGCg -3' miRNA: 3'- -CGUCU-------C-UCUUgUACCUCgcgUCCCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 3621 | 0.66 | 0.535489 |
Target: 5'- cGCGGAGGuGGGCAUGauGCGgCAGGcgcuGGCg -3' miRNA: 3'- -CGUCUCU-CUUGUACcuCGC-GUCC----CCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 3680 | 0.69 | 0.354903 |
Target: 5'- uGCGG-GAGGugGUGGAGauacaGCuGcGGGCc -3' miRNA: 3'- -CGUCuCUCUugUACCUCg----CGuC-CCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 3896 | 0.67 | 0.501611 |
Target: 5'- aGCAGAaggucccGuAGGAgGUGGAGaa-GGGGGCg -3' miRNA: 3'- -CGUCU-------C-UCUUgUACCUCgcgUCCCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 4219 | 0.7 | 0.329244 |
Target: 5'- uGCAGguaaagccacuGGAGGGC-UGG-GUGCGGGGGg -3' miRNA: 3'- -CGUC-----------UCUCUUGuACCuCGCGUCCCCg -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 5068 | 0.67 | 0.481317 |
Target: 5'- -gGGAGAGGAgGUGGgagagggaGGCGaaggccuugAGGGGCu -3' miRNA: 3'- cgUCUCUCUUgUACC--------UCGCg--------UCCCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 5434 | 0.71 | 0.297203 |
Target: 5'- aGguGAGGGGcgGUGGcAGCgGCGGGGcGCg -3' miRNA: 3'- -CguCUCUCUugUACC-UCG-CGUCCC-CG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 5454 | 0.68 | 0.439965 |
Target: 5'- -aGGAGAGGuguugggugGCAUGGcccuuGGCGCGgagcuugccGGGGCc -3' miRNA: 3'- cgUCUCUCU---------UGUACC-----UCGCGU---------CCCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 5721 | 0.73 | 0.21568 |
Target: 5'- cGCGGGuGAGGAagaggcugucggUGUccccguagacGGAGCGCAGGGGCc -3' miRNA: 3'- -CGUCU-CUCUU------------GUA----------CCUCGCGUCCCCG- -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 6524 | 0.68 | 0.439965 |
Target: 5'- aGCAGAGGcGGCcgcccuugcgGGAGCaGUAGGGGg -3' miRNA: 3'- -CGUCUCUcUUGua--------CCUCG-CGUCCCCg -5' |
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27481 | 3' | -55.5 | NC_005869.1 | + | 7118 | 0.71 | 0.265516 |
Target: 5'- cGCGGuGAuacagacagcucuuGGugAgGGAGCGCAGGGuGCg -3' miRNA: 3'- -CGUCuCU--------------CUugUaCCUCGCGUCCC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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