miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2751 5' -50.1 NC_001491.2 + 47393 0.66 0.993163
Target:  5'- cAGCAg--GCGcCGGugGCGUucaaCCCAGCg -3'
miRNA:   3'- -UCGUuaaCGUuGUUugCGCG----GGGUUG- -5'
2751 5' -50.1 NC_001491.2 + 80508 0.66 0.993062
Target:  5'- cGGCGGUUGcCAGCAcgggaguAGUGCGCUCCGc- -3'
miRNA:   3'- -UCGUUAAC-GUUGU-------UUGCGCGGGGUug -5'
2751 5' -50.1 NC_001491.2 + 137678 0.66 0.993062
Target:  5'- gAGCGGgcGCGggagcgcGCGAGCGCcGCCUCGGg -3'
miRNA:   3'- -UCGUUaaCGU-------UGUUUGCG-CGGGGUUg -5'
2751 5' -50.1 NC_001491.2 + 5388 0.66 0.992097
Target:  5'- uAGCGGaUGUcuGCAGGCGCGUaaCCAGCu -3'
miRNA:   3'- -UCGUUaACGu-UGUUUGCGCGg-GGUUG- -5'
2751 5' -50.1 NC_001491.2 + 8632 0.66 0.990903
Target:  5'- uGGCAuggcGCGACcuccagcuAACGCGCacgaCCAGCg -3'
miRNA:   3'- -UCGUuaa-CGUUGu-------UUGCGCGg---GGUUG- -5'
2751 5' -50.1 NC_001491.2 + 57698 0.66 0.990776
Target:  5'- gAGCAcuggcugaaacugGUUGCGAaaguUGCGCCCCuccACa -3'
miRNA:   3'- -UCGU-------------UAACGUUguuuGCGCGGGGu--UG- -5'
2751 5' -50.1 NC_001491.2 + 34820 0.67 0.989571
Target:  5'- gGGCAGacaGCAGCucguuguacACGgGCUCCAGCg -3'
miRNA:   3'- -UCGUUaa-CGUUGuu-------UGCgCGGGGUUG- -5'
2751 5' -50.1 NC_001491.2 + 123342 0.67 0.989571
Target:  5'- cGCGA--GCAgGCGAACGCGUguCCCAGg -3'
miRNA:   3'- uCGUUaaCGU-UGUUUGCGCG--GGGUUg -5'
2751 5' -50.1 NC_001491.2 + 92074 0.67 0.988092
Target:  5'- cAGCAuaucCAA-GGACGCGCCCaCGACg -3'
miRNA:   3'- -UCGUuaacGUUgUUUGCGCGGG-GUUG- -5'
2751 5' -50.1 NC_001491.2 + 141408 0.67 0.986455
Target:  5'- cGCcAUgggGUAcacGCAcACGCGCCCCAc- -3'
miRNA:   3'- uCGuUAa--CGU---UGUuUGCGCGGGGUug -5'
2751 5' -50.1 NC_001491.2 + 89607 0.67 0.98465
Target:  5'- uGUAAUUGUuuaccuccccaGGCuuGCGCGCUCCGcaGCg -3'
miRNA:   3'- uCGUUAACG-----------UUGuuUGCGCGGGGU--UG- -5'
2751 5' -50.1 NC_001491.2 + 85999 0.68 0.9805
Target:  5'- cGGCAGcgGCGuCAAACGCGgCCaCgGGCg -3'
miRNA:   3'- -UCGUUaaCGUuGUUUGCGC-GG-GgUUG- -5'
2751 5' -50.1 NC_001491.2 + 148366 0.68 0.9805
Target:  5'- gGGUAcagGCGcGCGAACGCGgCCUCGGCc -3'
miRNA:   3'- -UCGUuaaCGU-UGUUUGCGC-GGGGUUG- -5'
2751 5' -50.1 NC_001491.2 + 34493 0.68 0.9805
Target:  5'- uGGCG--UGCucggcCAcGCGCGCCCUGGCc -3'
miRNA:   3'- -UCGUuaACGuu---GUuUGCGCGGGGUUG- -5'
2751 5' -50.1 NC_001491.2 + 65848 0.68 0.9805
Target:  5'- cGGCGAUaUGCAcGCAAGCGCcGCCaUGACu -3'
miRNA:   3'- -UCGUUA-ACGU-UGUUUGCG-CGGgGUUG- -5'
2751 5' -50.1 NC_001491.2 + 34419 0.68 0.978135
Target:  5'- cGGCcGUcGCAuggGCAGAgaGCGCCCCGGa -3'
miRNA:   3'- -UCGuUAaCGU---UGUUUg-CGCGGGGUUg -5'
2751 5' -50.1 NC_001491.2 + 133892 0.68 0.973639
Target:  5'- cGCGgucgggauaaccaccAUUGCGACGAucuuguuGCGCGCCUUAAg -3'
miRNA:   3'- uCGU---------------UAACGUUGUU-------UGCGCGGGGUUg -5'
2751 5' -50.1 NC_001491.2 + 145369 0.68 0.969461
Target:  5'- gAGCg---GCAGCucuucggGGugGCgGCCCCAGCg -3'
miRNA:   3'- -UCGuuaaCGUUG-------UUugCG-CGGGGUUG- -5'
2751 5' -50.1 NC_001491.2 + 48836 0.69 0.966537
Target:  5'- aAGCGGUaUGCAACAAGCacgcucGCGCCa-GGCg -3'
miRNA:   3'- -UCGUUA-ACGUUGUUUG------CGCGGggUUG- -5'
2751 5' -50.1 NC_001491.2 + 147192 0.69 0.963064
Target:  5'- cGGCAGcagGUGGCGGuCGUaGCCCCGGCg -3'
miRNA:   3'- -UCGUUaa-CGUUGUUuGCG-CGGGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.