miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27514 5' -50.4 NC_005879.1 + 6978 0.66 0.895121
Target:  5'- cCGuUGGUGUuaggguguGUCGACaUCGACACa -3'
miRNA:   3'- aGUuACCACGu-------CAGCUGgAGUUGUGg -5'
27514 5' -50.4 NC_005879.1 + 8857 0.66 0.87958
Target:  5'- aCAAcuucUGGUGCGGUCaugcCCUUcACAUCa -3'
miRNA:   3'- aGUU----ACCACGUCAGcu--GGAGuUGUGG- -5'
27514 5' -50.4 NC_005879.1 + 27533 0.66 0.878773
Target:  5'- cCAuUGGUGCAgGUCGAgUUCAggguuuucugcguACGCUc -3'
miRNA:   3'- aGUuACCACGU-CAGCUgGAGU-------------UGUGG- -5'
27514 5' -50.4 NC_005879.1 + 33228 0.66 0.862903
Target:  5'- -----aGUGU-GUCGACgUCGACACCc -3'
miRNA:   3'- aguuacCACGuCAGCUGgAGUUGUGG- -5'
27514 5' -50.4 NC_005879.1 + 15692 0.67 0.845151
Target:  5'- aCAAUGGUGaauGUCGGCaaggacaAAUACCu -3'
miRNA:   3'- aGUUACCACgu-CAGCUGgag----UUGUGG- -5'
27514 5' -50.4 NC_005879.1 + 27480 0.67 0.835895
Target:  5'- gCGAUGGUGCGGU-GGCCgauagcuuaGGCauGCCa -3'
miRNA:   3'- aGUUACCACGUCAgCUGGag-------UUG--UGG- -5'
27514 5' -50.4 NC_005879.1 + 7052 0.67 0.826401
Target:  5'- ----aGGUGU-GUCGAUgUCGACACa -3'
miRNA:   3'- aguuaCCACGuCAGCUGgAGUUGUGg -5'
27514 5' -50.4 NC_005879.1 + 33291 0.67 0.816678
Target:  5'- -uGAUGG-GU-GUCGACgUCGACACa -3'
miRNA:   3'- agUUACCaCGuCAGCUGgAGUUGUGg -5'
27514 5' -50.4 NC_005879.1 + 29319 0.67 0.816678
Target:  5'- cCAGUaaaaagagGguGUCGACgUCGACACCc -3'
miRNA:   3'- aGUUAcca-----CguCAGCUGgAGUUGUGG- -5'
27514 5' -50.4 NC_005879.1 + 29398 0.68 0.806738
Target:  5'- aCAAcccuagGguGUCGACgUCGACACCc -3'
miRNA:   3'- aGUUacca--CguCAGCUGgAGUUGUGG- -5'
27514 5' -50.4 NC_005879.1 + 24698 0.68 0.806738
Target:  5'- ----cGGaagaauagGguGUCGACgUCGACACCc -3'
miRNA:   3'- aguuaCCa-------CguCAGCUGgAGUUGUGG- -5'
27514 5' -50.4 NC_005879.1 + 4617 0.68 0.786259
Target:  5'- gCAGUGGUGguGgccauagCGGCUUUgAugGCCg -3'
miRNA:   3'- aGUUACCACguCa------GCUGGAG-UugUGG- -5'
27514 5' -50.4 NC_005879.1 + 34751 0.69 0.743259
Target:  5'- cUUAAguagGguGUCGACgUCGACACCc -3'
miRNA:   3'- -AGUUaccaCguCAGCUGgAGUUGUGG- -5'
27514 5' -50.4 NC_005879.1 + 14590 0.69 0.743259
Target:  5'- ---uUGGUGUugaGGUCGACCguaccaUUGACGCCc -3'
miRNA:   3'- aguuACCACG---UCAGCUGG------AGUUGUGG- -5'
27514 5' -50.4 NC_005879.1 + 24627 0.69 0.732162
Target:  5'- --uGUGG-GU-GUCGACgUCGACACCc -3'
miRNA:   3'- aguUACCaCGuCAGCUGgAGUUGUGG- -5'
27514 5' -50.4 NC_005879.1 + 38048 0.69 0.732162
Target:  5'- aCAAUGGUGUcgacGGUCGAC----ACACCc -3'
miRNA:   3'- aGUUACCACG----UCAGCUGgaguUGUGG- -5'
27514 5' -50.4 NC_005879.1 + 36213 0.7 0.663695
Target:  5'- cUCGGcaGUGU-GUCGACgUCGACACCg -3'
miRNA:   3'- -AGUUacCACGuCAGCUGgAGUUGUGG- -5'
27514 5' -50.4 NC_005879.1 + 29743 0.7 0.652094
Target:  5'- uUCGAUGGcuaagucGCAaaucaaaguGUCGaaacGCCUCAACACCc -3'
miRNA:   3'- -AGUUACCa------CGU---------CAGC----UGGAGUUGUGG- -5'
27514 5' -50.4 NC_005879.1 + 36285 0.71 0.605602
Target:  5'- gCAAaGGcGguGUCGACgUCGACACa -3'
miRNA:   3'- aGUUaCCaCguCAGCUGgAGUUGUGg -5'
27514 5' -50.4 NC_005879.1 + 5362 0.72 0.570958
Target:  5'- -aGAUGGgucaGCAgGUCGGCC-CAAUGCCg -3'
miRNA:   3'- agUUACCa---CGU-CAGCUGGaGUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.