Results 21 - 28 of 28 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 27514 | 5' | -50.4 | NC_005879.1 | + | 34821 | 0.72 | 0.536814 |
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Target: 5'- -aGAUGG-GU-GUCGACgUCGACACCc -3' miRNA: 3'- agUUACCaCGuCAGCUGgAGUUGUGG- -5' |
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| 27514 | 5' | -50.4 | NC_005879.1 | + | 21789 | 0.73 | 0.503406 |
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Target: 5'- gCGGUGaGauagGguGUCGACgUCGACACCc -3' miRNA: 3'- aGUUAC-Ca---CguCAGCUGgAGUUGUGG- -5' |
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| 27514 | 5' | -50.4 | NC_005879.1 | + | 16833 | 0.74 | 0.470933 |
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Target: 5'- ----gGGgagGguGUCGACgUCGACACCc -3' miRNA: 3'- aguuaCCa--CguCAGCUGgAGUUGUGG- -5' |
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| 27514 | 5' | -50.4 | NC_005879.1 | + | 16899 | 0.74 | 0.470933 |
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Target: 5'- ----cGGgGguGUCGACgUCGACACCc -3' miRNA: 3'- aguuaCCaCguCAGCUGgAGUUGUGG- -5' |
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| 27514 | 5' | -50.4 | NC_005879.1 | + | 24439 | 0.76 | 0.353146 |
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Target: 5'- gUCAugcuUGGUGCAGguagCGuCUUCAGCAUCa -3' miRNA: 3'- -AGUu---ACCACGUCa---GCuGGAGUUGUGG- -5' |
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| 27514 | 5' | -50.4 | NC_005879.1 | + | 37979 | 0.79 | 0.218533 |
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Target: 5'- uUCGG-GGUGU-GUCGACCgUCGACACCa -3' miRNA: 3'- -AGUUaCCACGuCAGCUGG-AGUUGUGG- -5' |
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| 27514 | 5' | -50.4 | NC_005879.1 | + | 21867 | 0.82 | 0.142266 |
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Target: 5'- aUAAUGGgcgGguGUCGACgUCGACACCc -3' miRNA: 3'- aGUUACCa--CguCAGCUGgAGUUGUGG- -5' |
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| 27514 | 5' | -50.4 | NC_005879.1 | + | 14657 | 1 | 0.009454 |
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Target: 5'- gUCAAUGGUaCGGUCGACCUCAACACCa -3' miRNA: 3'- -AGUUACCAcGUCAGCUGGAGUUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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