Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27514 | 5' | -50.4 | NC_005879.1 | + | 33228 | 0.66 | 0.862903 |
Target: 5'- -----aGUGU-GUCGACgUCGACACCc -3' miRNA: 3'- aguuacCACGuCAGCUGgAGUUGUGG- -5' |
|||||||
27514 | 5' | -50.4 | NC_005879.1 | + | 33291 | 0.67 | 0.816678 |
Target: 5'- -uGAUGG-GU-GUCGACgUCGACACa -3' miRNA: 3'- agUUACCaCGuCAGCUGgAGUUGUGg -5' |
|||||||
27514 | 5' | -50.4 | NC_005879.1 | + | 34751 | 0.69 | 0.743259 |
Target: 5'- cUUAAguagGguGUCGACgUCGACACCc -3' miRNA: 3'- -AGUUaccaCguCAGCUGgAGUUGUGG- -5' |
|||||||
27514 | 5' | -50.4 | NC_005879.1 | + | 34821 | 0.72 | 0.536814 |
Target: 5'- -aGAUGG-GU-GUCGACgUCGACACCc -3' miRNA: 3'- agUUACCaCGuCAGCUGgAGUUGUGG- -5' |
|||||||
27514 | 5' | -50.4 | NC_005879.1 | + | 36213 | 0.7 | 0.663695 |
Target: 5'- cUCGGcaGUGU-GUCGACgUCGACACCg -3' miRNA: 3'- -AGUUacCACGuCAGCUGgAGUUGUGG- -5' |
|||||||
27514 | 5' | -50.4 | NC_005879.1 | + | 36285 | 0.71 | 0.605602 |
Target: 5'- gCAAaGGcGguGUCGACgUCGACACa -3' miRNA: 3'- aGUUaCCaCguCAGCUGgAGUUGUGg -5' |
|||||||
27514 | 5' | -50.4 | NC_005879.1 | + | 37979 | 0.79 | 0.218533 |
Target: 5'- uUCGG-GGUGU-GUCGACCgUCGACACCa -3' miRNA: 3'- -AGUUaCCACGuCAGCUGG-AGUUGUGG- -5' |
|||||||
27514 | 5' | -50.4 | NC_005879.1 | + | 38048 | 0.69 | 0.732162 |
Target: 5'- aCAAUGGUGUcgacGGUCGAC----ACACCc -3' miRNA: 3'- aGUUACCACG----UCAGCUGgaguUGUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home