miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27553 3' -57.6 NC_005881.1 + 154158 0.66 0.918461
Target:  5'- aCCUCCACCaCCacaaCCACCAGcagcaGCUg -3'
miRNA:   3'- aGGAGGUGGaGGag--GGUGGUUag---CGG- -5'
27553 3' -57.6 NC_005881.1 + 134743 0.66 0.918461
Target:  5'- cUCCUCCACCaCC-CaCCACCAcUCa-- -3'
miRNA:   3'- -AGGAGGUGGaGGaG-GGUGGUuAGcgg -5'
27553 3' -57.6 NC_005881.1 + 173723 0.66 0.91513
Target:  5'- cUCCUCUuCCUCCUCUU-CCAAgauuuuaucuucugUGCCa -3'
miRNA:   3'- -AGGAGGuGGAGGAGGGuGGUUa-------------GCGG- -5'
27553 3' -57.6 NC_005881.1 + 189796 0.66 0.912866
Target:  5'- ---cCCACCUCUUCUgAUCAAggUGCCa -3'
miRNA:   3'- aggaGGUGGAGGAGGgUGGUUa-GCGG- -5'
27553 3' -57.6 NC_005881.1 + 201980 0.66 0.912866
Target:  5'- ---cCCACCUCUUCUgAUCAAggUGCCa -3'
miRNA:   3'- aggaGGUGGAGGAGGgUGGUUa-GCGG- -5'
27553 3' -57.6 NC_005881.1 + 125022 0.66 0.912866
Target:  5'- -gUUCCACCUUCUCCUGCUGuuguAUCaCCa -3'
miRNA:   3'- agGAGGUGGAGGAGGGUGGU----UAGcGG- -5'
27553 3' -57.6 NC_005881.1 + 54637 0.66 0.90705
Target:  5'- aCUUCUGCCcCCUCCaaugguGCCAGU-GCCa -3'
miRNA:   3'- aGGAGGUGGaGGAGGg-----UGGUUAgCGG- -5'
27553 3' -57.6 NC_005881.1 + 158526 0.66 0.906457
Target:  5'- aUCUUaCCACCUCUgacaacaCCGCCAGUggagugguugugaUGCCa -3'
miRNA:   3'- -AGGA-GGUGGAGGag-----GGUGGUUA-------------GCGG- -5'
27553 3' -57.6 NC_005881.1 + 14756 0.66 0.894766
Target:  5'- uUCUUCUuCCUCCUCCgAUUccUCGUCa -3'
miRNA:   3'- -AGGAGGuGGAGGAGGgUGGuuAGCGG- -5'
27553 3' -57.6 NC_005881.1 + 26338 0.67 0.888302
Target:  5'- aUUUUaacaACCUCUUCCCACCGGUCa-- -3'
miRNA:   3'- aGGAGg---UGGAGGAGGGUGGUUAGcgg -5'
27553 3' -57.6 NC_005881.1 + 203021 0.67 0.888302
Target:  5'- cUCCUCCaAUCguagUCUCUUGCCAucCGCCa -3'
miRNA:   3'- -AGGAGG-UGGa---GGAGGGUGGUuaGCGG- -5'
27553 3' -57.6 NC_005881.1 + 188755 0.67 0.888302
Target:  5'- cUCCUCCaAUCguagUCUCUUGCCAucCGCCa -3'
miRNA:   3'- -AGGAGG-UGGa---GGAGGGUGGUuaGCGG- -5'
27553 3' -57.6 NC_005881.1 + 205522 0.67 0.874748
Target:  5'- gUCUCCGCCUCCUuauuaucaCCCuCCucUUGCg -3'
miRNA:   3'- aGGAGGUGGAGGA--------GGGuGGuuAGCGg -5'
27553 3' -57.6 NC_005881.1 + 186255 0.67 0.874748
Target:  5'- gUCUCCGCCUCCUuauuaucaCCCuCCucUUGCg -3'
miRNA:   3'- aGGAGGUGGAGGA--------GGGuGGuuAGCGg -5'
27553 3' -57.6 NC_005881.1 + 206020 0.67 0.860386
Target:  5'- gCCuaUCUACCgCCUCCU-UCAAUUGCCa -3'
miRNA:   3'- aGG--AGGUGGaGGAGGGuGGUUAGCGG- -5'
27553 3' -57.6 NC_005881.1 + 185756 0.67 0.860386
Target:  5'- gCCuaUCUACCgCCUCCU-UCAAUUGCCa -3'
miRNA:   3'- aGG--AGGUGGaGGAGGGuGGUUAGCGG- -5'
27553 3' -57.6 NC_005881.1 + 205002 0.68 0.844483
Target:  5'- cCCUCC-CCacauuuuuucaaaUCUUCCCGCCuuucAUcCGCCa -3'
miRNA:   3'- aGGAGGuGG-------------AGGAGGGUGGu---UA-GCGG- -5'
27553 3' -57.6 NC_005881.1 + 31175 0.68 0.844483
Target:  5'- aUUCUCCACCUggaagugagUCCCAUucuuuaaCAGUCGCCu -3'
miRNA:   3'- -AGGAGGUGGAgg-------AGGGUG-------GUUAGCGG- -5'
27553 3' -57.6 NC_005881.1 + 186774 0.68 0.844483
Target:  5'- cCCUCC-CCacauuuuuucaaaUCUUCCCGCCuuucAUcCGCCa -3'
miRNA:   3'- aGGAGGuGG-------------AGGAGGGUGGu---UA-GCGG- -5'
27553 3' -57.6 NC_005881.1 + 134770 0.68 0.837423
Target:  5'- cUCCUCCACCcCCgccaaCCACCAcacaaGCUc -3'
miRNA:   3'- -AGGAGGUGGaGGag---GGUGGUuag--CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.