miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27557 3' -53 NC_005882.1 + 18968 0.66 0.766587
Target:  5'- -aGCGCCGAU----CGUCAUCGGccaUCCg -3'
miRNA:   3'- gaCGCGGCUAaccuGUAGUGGCU---AGG- -5'
27557 3' -53 NC_005882.1 + 18593 0.66 0.766587
Target:  5'- cCUGCGCCacuuGA-UGGACG-CAgCGAaCCg -3'
miRNA:   3'- -GACGCGG----CUaACCUGUaGUgGCUaGG- -5'
27557 3' -53 NC_005882.1 + 933 0.66 0.765531
Target:  5'- gCUG-GCgGAUcgGGGCGUCgugcaaaACCGGUCUg -3'
miRNA:   3'- -GACgCGgCUAa-CCUGUAG-------UGGCUAGG- -5'
27557 3' -53 NC_005882.1 + 32780 0.66 0.755962
Target:  5'- gUGCGCagcaacgccgcuUGAUcgUGGugAUCGCgCGAUCg -3'
miRNA:   3'- gACGCG------------GCUA--ACCugUAGUG-GCUAGg -5'
27557 3' -53 NC_005882.1 + 14371 0.66 0.734316
Target:  5'- gUGCGCCGAc---ACGUCGCCcGUCa -3'
miRNA:   3'- gACGCGGCUaaccUGUAGUGGcUAGg -5'
27557 3' -53 NC_005882.1 + 9939 0.66 0.734316
Target:  5'- -cGgGCCGuAUUGGcUcgCGCCGGUgCCa -3'
miRNA:   3'- gaCgCGGC-UAACCuGuaGUGGCUA-GG- -5'
27557 3' -53 NC_005882.1 + 22373 0.66 0.731028
Target:  5'- uCUGCGcCCGuAUgaagcaucacuuccUGGACGucuUCGCCG-UCCu -3'
miRNA:   3'- -GACGC-GGC-UA--------------ACCUGU---AGUGGCuAGG- -5'
27557 3' -53 NC_005882.1 + 14532 0.66 0.722216
Target:  5'- aCUGCGCCGAcUGGGCcaaGUUcuacagccucgcgGCCGAc-- -3'
miRNA:   3'- -GACGCGGCUaACCUG---UAG-------------UGGCUagg -5'
27557 3' -53 NC_005882.1 + 23549 0.66 0.716676
Target:  5'- cCUGCGCCug-UGGggcaaccgcacggcgGCAUgGCCGA-CCg -3'
miRNA:   3'- -GACGCGGcuaACC---------------UGUAgUGGCUaGG- -5'
27557 3' -53 NC_005882.1 + 28402 0.66 0.712228
Target:  5'- aCUGCGCCuGGUUGGcccAgGUCACUG--CCu -3'
miRNA:   3'- -GACGCGG-CUAACC---UgUAGUGGCuaGG- -5'
27557 3' -53 NC_005882.1 + 31442 0.67 0.70105
Target:  5'- gCUGCGCCGGcagccGCGUCacGCCGA-CCa -3'
miRNA:   3'- -GACGCGGCUaacc-UGUAG--UGGCUaGG- -5'
27557 3' -53 NC_005882.1 + 25827 0.67 0.70105
Target:  5'- -aGgGCCGcacGGcGCAucgucUCGCCGAUCCg -3'
miRNA:   3'- gaCgCGGCuaaCC-UGU-----AGUGGCUAGG- -5'
27557 3' -53 NC_005882.1 + 22696 0.67 0.699927
Target:  5'- aCUGCGCCGcgUcgacgucGGACAgcgacugCACCGGc-- -3'
miRNA:   3'- -GACGCGGCuaA-------CCUGUa------GUGGCUagg -5'
27557 3' -53 NC_005882.1 + 11900 0.67 0.689799
Target:  5'- -cGaCGCCGA--GGACgAUCACCGcgCg -3'
miRNA:   3'- gaC-GCGGCUaaCCUG-UAGUGGCuaGg -5'
27557 3' -53 NC_005882.1 + 21303 0.67 0.678489
Target:  5'- aUGCGCCGGUUGccuucggaauGGCuUgGCCGG-CCg -3'
miRNA:   3'- gACGCGGCUAAC----------CUGuAgUGGCUaGG- -5'
27557 3' -53 NC_005882.1 + 12609 0.67 0.667131
Target:  5'- gUGCGCCGAUcgccGCAgCGCCGG-CCg -3'
miRNA:   3'- gACGCGGCUAacc-UGUaGUGGCUaGG- -5'
27557 3' -53 NC_005882.1 + 28629 0.67 0.667131
Target:  5'- uUGCGCCGAUcGGACcgCAUCc---- -3'
miRNA:   3'- gACGCGGCUAaCCUGuaGUGGcuagg -5'
27557 3' -53 NC_005882.1 + 8238 0.68 0.644321
Target:  5'- -aGCGCCGGUcGGcugAUCAUCGAcaUCCc -3'
miRNA:   3'- gaCGCGGCUAaCCug-UAGUGGCU--AGG- -5'
27557 3' -53 NC_005882.1 + 3252 0.68 0.632892
Target:  5'- -cGgGCCGAUcUGGAuCGUCgGCCGG-CCg -3'
miRNA:   3'- gaCgCGGCUA-ACCU-GUAG-UGGCUaGG- -5'
27557 3' -53 NC_005882.1 + 20008 0.68 0.621463
Target:  5'- uUGCGCCGGUUauuaacGGA--UCACCGcGUUCg -3'
miRNA:   3'- gACGCGGCUAA------CCUguAGUGGC-UAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.