miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27564 3' -50.3 NC_005882.1 + 3730 0.66 0.894813
Target:  5'- gGACGAAuaccuCCGGUUcaagUUCGGCCGUcucgacaaGCCg -3'
miRNA:   3'- gCUGUUUc----GGCUAG----AAGUCGGCA--------UGG- -5'
27564 3' -50.3 NC_005882.1 + 14266 0.66 0.894062
Target:  5'- uCGACGGccgcggcGGCCG--CUUCcGCgCGUGCCu -3'
miRNA:   3'- -GCUGUU-------UCGGCuaGAAGuCG-GCAUGG- -5'
27564 3' -50.3 NC_005882.1 + 12400 0.66 0.887165
Target:  5'- -aGCGuuGCCGAUCggCGccGCCGgcaGCCg -3'
miRNA:   3'- gcUGUuuCGGCUAGaaGU--CGGCa--UGG- -5'
27564 3' -50.3 NC_005882.1 + 24976 0.66 0.887165
Target:  5'- gGAC--GGCUGaAUCUUCAGCaccaGUAgCa -3'
miRNA:   3'- gCUGuuUCGGC-UAGAAGUCGg---CAUgG- -5'
27564 3' -50.3 NC_005882.1 + 25576 0.66 0.879225
Target:  5'- uCGAUuguccGGCCGAgg--CGGUCGUACUg -3'
miRNA:   3'- -GCUGuu---UCGGCUagaaGUCGGCAUGG- -5'
27564 3' -50.3 NC_005882.1 + 34293 0.66 0.879225
Target:  5'- gCGGucGAGCCGAUgUUCGagaaacggaucGCCGcACCa -3'
miRNA:   3'- -GCUguUUCGGCUAgAAGU-----------CGGCaUGG- -5'
27564 3' -50.3 NC_005882.1 + 21202 0.66 0.878415
Target:  5'- uCGACGAGcauGCCGAggucgagUCggacgCGGCCG-GCCa -3'
miRNA:   3'- -GCUGUUU---CGGCU-------AGaa---GUCGGCaUGG- -5'
27564 3' -50.3 NC_005882.1 + 13554 0.66 0.871
Target:  5'- aUGACGAugcGCuCGAUCUUC-GCCG-ACa -3'
miRNA:   3'- -GCUGUUu--CG-GCUAGAAGuCGGCaUGg -5'
27564 3' -50.3 NC_005882.1 + 16269 0.66 0.871
Target:  5'- cCGACGAcGUCGAUCggCAcgauguaguuGCCG-ACCu -3'
miRNA:   3'- -GCUGUUuCGGCUAGaaGU----------CGGCaUGG- -5'
27564 3' -50.3 NC_005882.1 + 3832 0.66 0.871
Target:  5'- aGcCGGAGCUGAaggUCAGCUGU-CCg -3'
miRNA:   3'- gCuGUUUCGGCUagaAGUCGGCAuGG- -5'
27564 3' -50.3 NC_005882.1 + 8775 0.66 0.862497
Target:  5'- uGACGAAGCgaGGUCU-C-GCCGaugACCg -3'
miRNA:   3'- gCUGUUUCGg-CUAGAaGuCGGCa--UGG- -5'
27564 3' -50.3 NC_005882.1 + 18357 0.66 0.854615
Target:  5'- -cGCAAGGCCGGUCUgaugauccugcaggaCAGCgGgcaaaugGCCg -3'
miRNA:   3'- gcUGUUUCGGCUAGAa--------------GUCGgCa------UGG- -5'
27564 3' -50.3 NC_005882.1 + 13984 0.66 0.853726
Target:  5'- gCGGCGAAGCgGcgCUcgauacgCuGCCcGUACCg -3'
miRNA:   3'- -GCUGUUUCGgCuaGAa------GuCGG-CAUGG- -5'
27564 3' -50.3 NC_005882.1 + 11242 0.67 0.844694
Target:  5'- cCGACAgcAAGCCGAauucuacggcuUCgaugagcgCAGCgCGUGCUc -3'
miRNA:   3'- -GCUGU--UUCGGCU-----------AGaa------GUCG-GCAUGG- -5'
27564 3' -50.3 NC_005882.1 + 14083 0.67 0.844694
Target:  5'- cCGACGAAgacGCCGAUCca-GGCgaaCGUAUCg -3'
miRNA:   3'- -GCUGUUU---CGGCUAGaagUCG---GCAUGG- -5'
27564 3' -50.3 NC_005882.1 + 402 0.67 0.835413
Target:  5'- uGGCGAGcGgCGAUCUccUCGcGCCGgACCg -3'
miRNA:   3'- gCUGUUU-CgGCUAGA--AGU-CGGCaUGG- -5'
27564 3' -50.3 NC_005882.1 + 11804 0.67 0.816143
Target:  5'- gGGCuacGAGCUGGUgUUC-GCCGcgGCCa -3'
miRNA:   3'- gCUGu--UUCGGCUAgAAGuCGGCa-UGG- -5'
27564 3' -50.3 NC_005882.1 + 7338 0.67 0.816143
Target:  5'- uCGACAguccGAGCCGucgCUacaCAGCUcggGUACCa -3'
miRNA:   3'- -GCUGU----UUCGGCua-GAa--GUCGG---CAUGG- -5'
27564 3' -50.3 NC_005882.1 + 4451 0.67 0.806177
Target:  5'- aCGACGGGccacCCGGUCUccCAGCCGaacagcaaUACCg -3'
miRNA:   3'- -GCUGUUUc---GGCUAGAa-GUCGGC--------AUGG- -5'
27564 3' -50.3 NC_005882.1 + 25724 0.67 0.806177
Target:  5'- cCGaACAgcGCCGAUUacgggcgCGGCCGUggcaGCCg -3'
miRNA:   3'- -GC-UGUuuCGGCUAGaa-----GUCGGCA----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.