miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27564 3' -50.3 NC_005882.1 + 6918 0.67 0.806177
Target:  5'- gCGAUAucGUCGAgCUUCAGCUc-GCCg -3'
miRNA:   3'- -GCUGUuuCGGCUaGAAGUCGGcaUGG- -5'
27564 3' -50.3 NC_005882.1 + 20478 0.68 0.796007
Target:  5'- aCGGCAAGGaagCGAUCcgcacgaagaUCGGCCGccgGCCg -3'
miRNA:   3'- -GCUGUUUCg--GCUAGa---------AGUCGGCa--UGG- -5'
27564 3' -50.3 NC_005882.1 + 29337 0.68 0.785646
Target:  5'- gCGGCuucGGaCCGAUgcCUUCAcGCCaGUACCg -3'
miRNA:   3'- -GCUGuu-UC-GGCUA--GAAGU-CGG-CAUGG- -5'
27564 3' -50.3 NC_005882.1 + 13714 0.68 0.785646
Target:  5'- uCGAUugcGAGCCGGgcaUCgcgCGGCCG-GCCa -3'
miRNA:   3'- -GCUGu--UUCGGCU---AGaa-GUCGGCaUGG- -5'
27564 3' -50.3 NC_005882.1 + 17862 0.68 0.775105
Target:  5'- -uGCGAGGCaucaaGGUCgaggCGGCCGgcgACCg -3'
miRNA:   3'- gcUGUUUCGg----CUAGaa--GUCGGCa--UGG- -5'
27564 3' -50.3 NC_005882.1 + 31668 0.68 0.7644
Target:  5'- uCGACGagcGAGCCGAguugccccggCUgcCAGCCGUuCCc -3'
miRNA:   3'- -GCUGU---UUCGGCUa---------GAa-GUCGGCAuGG- -5'
27564 3' -50.3 NC_005882.1 + 4896 0.68 0.7644
Target:  5'- gCGGCAAAGCaGAUCaa-GGCCGcugucgaagcUGCCg -3'
miRNA:   3'- -GCUGUUUCGgCUAGaagUCGGC----------AUGG- -5'
27564 3' -50.3 NC_005882.1 + 6762 0.68 0.753541
Target:  5'- aGGCGGAGUCGGUUauucgCGGCaaccugCGUGCCg -3'
miRNA:   3'- gCUGUUUCGGCUAGaa---GUCG------GCAUGG- -5'
27564 3' -50.3 NC_005882.1 + 12157 0.69 0.742545
Target:  5'- cCGGCcGAGCUGggCgaggcgCAGCCGUucaACCc -3'
miRNA:   3'- -GCUGuUUCGGCuaGaa----GUCGGCA---UGG- -5'
27564 3' -50.3 NC_005882.1 + 21163 0.69 0.742545
Target:  5'- uCGGCAAcGCCGAgcgcCUUCGcGCCG-GCUg -3'
miRNA:   3'- -GCUGUUuCGGCUa---GAAGU-CGGCaUGG- -5'
27564 3' -50.3 NC_005882.1 + 30272 0.69 0.731423
Target:  5'- uGcCGAGGUCGG---UCAGCCGUACg -3'
miRNA:   3'- gCuGUUUCGGCUagaAGUCGGCAUGg -5'
27564 3' -50.3 NC_005882.1 + 26957 0.69 0.731423
Target:  5'- cCGGCAAguucgcGGCCG-UgaUCGGgCGUGCCg -3'
miRNA:   3'- -GCUGUU------UCGGCuAgaAGUCgGCAUGG- -5'
27564 3' -50.3 NC_005882.1 + 24071 0.69 0.72019
Target:  5'- uCGGCAAGGUCGAg---CuGCCGggcgGCCu -3'
miRNA:   3'- -GCUGUUUCGGCUagaaGuCGGCa---UGG- -5'
27564 3' -50.3 NC_005882.1 + 8159 0.69 0.704302
Target:  5'- gCGuCGcGGCCGGUCgggaugucgaugaUCAGCCG-ACCg -3'
miRNA:   3'- -GCuGUuUCGGCUAGa------------AGUCGGCaUGG- -5'
27564 3' -50.3 NC_005882.1 + 26105 0.69 0.692857
Target:  5'- cCGGCAGAGCCuuggccauaucCUUCAGCuCGaACCg -3'
miRNA:   3'- -GCUGUUUCGGcua--------GAAGUCG-GCaUGG- -5'
27564 3' -50.3 NC_005882.1 + 20579 0.7 0.685958
Target:  5'- cCGACGca-CCGAUCaccaucgugUUCGGCCGgcgGCCg -3'
miRNA:   3'- -GCUGUuucGGCUAG---------AAGUCGGCa--UGG- -5'
27564 3' -50.3 NC_005882.1 + 12341 0.7 0.685958
Target:  5'- cCGGCGgcGCCGAUCggCAacGCUGguucgGCCa -3'
miRNA:   3'- -GCUGUuuCGGCUAGaaGU--CGGCa----UGG- -5'
27564 3' -50.3 NC_005882.1 + 30537 0.7 0.685958
Target:  5'- cCGACAAGGUgaCGGUCgaCGuGCCGgagACCg -3'
miRNA:   3'- -GCUGUUUCG--GCUAGaaGU-CGGCa--UGG- -5'
27564 3' -50.3 NC_005882.1 + 22321 0.7 0.674414
Target:  5'- uGACGccGCUGGUCggUCcGCUGUACUg -3'
miRNA:   3'- gCUGUuuCGGCUAGa-AGuCGGCAUGG- -5'
27564 3' -50.3 NC_005882.1 + 11072 0.7 0.674414
Target:  5'- cCGGCGGuuccucGGCCucGAUCgUCAGCCGUucGCUg -3'
miRNA:   3'- -GCUGUU------UCGG--CUAGaAGUCGGCA--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.