Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27564 | 3' | -50.3 | NC_005882.1 | + | 4451 | 0.67 | 0.806177 |
Target: 5'- aCGACGGGccacCCGGUCUccCAGCCGaacagcaaUACCg -3' miRNA: 3'- -GCUGUUUc---GGCUAGAa-GUCGGC--------AUGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 31668 | 0.68 | 0.7644 |
Target: 5'- uCGACGagcGAGCCGAguugccccggCUgcCAGCCGUuCCc -3' miRNA: 3'- -GCUGU---UUCGGCUa---------GAa-GUCGGCAuGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 6762 | 0.68 | 0.753541 |
Target: 5'- aGGCGGAGUCGGUUauucgCGGCaaccugCGUGCCg -3' miRNA: 3'- gCUGUUUCGGCUAGaa---GUCG------GCAUGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 29337 | 0.68 | 0.785646 |
Target: 5'- gCGGCuucGGaCCGAUgcCUUCAcGCCaGUACCg -3' miRNA: 3'- -GCUGuu-UC-GGCUA--GAAGU-CGG-CAUGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 4896 | 0.68 | 0.7644 |
Target: 5'- gCGGCAAAGCaGAUCaa-GGCCGcugucgaagcUGCCg -3' miRNA: 3'- -GCUGUUUCGgCUAGaagUCGGC----------AUGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 20478 | 0.68 | 0.796007 |
Target: 5'- aCGGCAAGGaagCGAUCcgcacgaagaUCGGCCGccgGCCg -3' miRNA: 3'- -GCUGUUUCg--GCUAGa---------AGUCGGCa--UGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 13714 | 0.68 | 0.785646 |
Target: 5'- uCGAUugcGAGCCGGgcaUCgcgCGGCCG-GCCa -3' miRNA: 3'- -GCUGu--UUCGGCU---AGaa-GUCGGCaUGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 17862 | 0.68 | 0.775105 |
Target: 5'- -uGCGAGGCaucaaGGUCgaggCGGCCGgcgACCg -3' miRNA: 3'- gcUGUUUCGg----CUAGaa--GUCGGCa--UGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 21163 | 0.69 | 0.742545 |
Target: 5'- uCGGCAAcGCCGAgcgcCUUCGcGCCG-GCUg -3' miRNA: 3'- -GCUGUUuCGGCUa---GAAGU-CGGCaUGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 30272 | 0.69 | 0.731423 |
Target: 5'- uGcCGAGGUCGG---UCAGCCGUACg -3' miRNA: 3'- gCuGUUUCGGCUagaAGUCGGCAUGg -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 26957 | 0.69 | 0.731423 |
Target: 5'- cCGGCAAguucgcGGCCG-UgaUCGGgCGUGCCg -3' miRNA: 3'- -GCUGUU------UCGGCuAgaAGUCgGCAUGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 26105 | 0.69 | 0.692857 |
Target: 5'- cCGGCAGAGCCuuggccauaucCUUCAGCuCGaACCg -3' miRNA: 3'- -GCUGUUUCGGcua--------GAAGUCG-GCaUGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 8159 | 0.69 | 0.704302 |
Target: 5'- gCGuCGcGGCCGGUCgggaugucgaugaUCAGCCG-ACCg -3' miRNA: 3'- -GCuGUuUCGGCUAGa------------AGUCGGCaUGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 24071 | 0.69 | 0.72019 |
Target: 5'- uCGGCAAGGUCGAg---CuGCCGggcgGCCu -3' miRNA: 3'- -GCUGUUUCGGCUagaaGuCGGCa---UGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 12157 | 0.69 | 0.742545 |
Target: 5'- cCGGCcGAGCUGggCgaggcgCAGCCGUucaACCc -3' miRNA: 3'- -GCUGuUUCGGCuaGaa----GUCGGCA---UGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 11072 | 0.7 | 0.674414 |
Target: 5'- cCGGCGGuuccucGGCCucGAUCgUCAGCCGUucGCUg -3' miRNA: 3'- -GCUGUU------UCGG--CUAGaAGUCGGCA--UGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 20579 | 0.7 | 0.685958 |
Target: 5'- cCGACGca-CCGAUCaccaucgugUUCGGCCGgcgGCCg -3' miRNA: 3'- -GCUGUuucGGCUAG---------AAGUCGGCa--UGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 28909 | 0.7 | 0.639565 |
Target: 5'- aCGACGuAGCCGAUgaggagCUUCcGCCGUGg- -3' miRNA: 3'- -GCUGUuUCGGCUA------GAAGuCGGCAUgg -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 12341 | 0.7 | 0.685958 |
Target: 5'- cCGGCGgcGCCGAUCggCAacGCUGguucgGCCa -3' miRNA: 3'- -GCUGUuuCGGCUAGaaGU--CGGCa----UGG- -5' |
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27564 | 3' | -50.3 | NC_005882.1 | + | 30537 | 0.7 | 0.685958 |
Target: 5'- cCGACAAGGUgaCGGUCgaCGuGCCGgagACCg -3' miRNA: 3'- -GCUGUUUCG--GCUAGaaGU-CGGCa--UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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