Results 21 - 40 of 55 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27564 | 3' | -50.3 | NC_005882.1 | + | 34293 | 0.66 | 0.879225 |
Target: 5'- gCGGucGAGCCGAUgUUCGagaaacggaucGCCGcACCa -3' miRNA: 3'- -GCUguUUCGGCUAgAAGU-----------CGGCaUGG- -5' |
|||||||
27564 | 3' | -50.3 | NC_005882.1 | + | 25724 | 0.67 | 0.806177 |
Target: 5'- cCGaACAgcGCCGAUUacgggcgCGGCCGUggcaGCCg -3' miRNA: 3'- -GC-UGUuuCGGCUAGaa-----GUCGGCA----UGG- -5' |
|||||||
27564 | 3' | -50.3 | NC_005882.1 | + | 4451 | 0.67 | 0.806177 |
Target: 5'- aCGACGGGccacCCGGUCUccCAGCCGaacagcaaUACCg -3' miRNA: 3'- -GCUGUUUc---GGCUAGAa-GUCGGC--------AUGG- -5' |
|||||||
27564 | 3' | -50.3 | NC_005882.1 | + | 25576 | 0.66 | 0.879225 |
Target: 5'- uCGAUuguccGGCCGAgg--CGGUCGUACUg -3' miRNA: 3'- -GCUGuu---UCGGCUagaaGUCGGCAUGG- -5' |
|||||||
27564 | 3' | -50.3 | NC_005882.1 | + | 3730 | 0.66 | 0.894813 |
Target: 5'- gGACGAAuaccuCCGGUUcaagUUCGGCCGUcucgacaaGCCg -3' miRNA: 3'- gCUGUUUc----GGCUAG----AAGUCGGCA--------UGG- -5' |
|||||||
27564 | 3' | -50.3 | NC_005882.1 | + | 7338 | 0.67 | 0.816143 |
Target: 5'- uCGACAguccGAGCCGucgCUacaCAGCUcggGUACCa -3' miRNA: 3'- -GCUGU----UUCGGCua-GAa--GUCGG---CAUGG- -5' |
|||||||
27564 | 3' | -50.3 | NC_005882.1 | + | 3832 | 0.66 | 0.871 |
Target: 5'- aGcCGGAGCUGAaggUCAGCUGU-CCg -3' miRNA: 3'- gCuGUUUCGGCUagaAGUCGGCAuGG- -5' |
|||||||
27564 | 3' | -50.3 | NC_005882.1 | + | 24976 | 0.66 | 0.887165 |
Target: 5'- gGAC--GGCUGaAUCUUCAGCaccaGUAgCa -3' miRNA: 3'- gCUGuuUCGGC-UAGAAGUCGg---CAUgG- -5' |
|||||||
27564 | 3' | -50.3 | NC_005882.1 | + | 29337 | 0.68 | 0.785646 |
Target: 5'- gCGGCuucGGaCCGAUgcCUUCAcGCCaGUACCg -3' miRNA: 3'- -GCUGuu-UC-GGCUA--GAAGU-CGG-CAUGG- -5' |
|||||||
27564 | 3' | -50.3 | NC_005882.1 | + | 13984 | 0.66 | 0.853726 |
Target: 5'- gCGGCGAAGCgGcgCUcgauacgCuGCCcGUACCg -3' miRNA: 3'- -GCUGUUUCGgCuaGAa------GuCGG-CAUGG- -5' |
|||||||
27564 | 3' | -50.3 | NC_005882.1 | + | 11242 | 0.67 | 0.844694 |
Target: 5'- cCGACAgcAAGCCGAauucuacggcuUCgaugagcgCAGCgCGUGCUc -3' miRNA: 3'- -GCUGU--UUCGGCU-----------AGaa------GUCG-GCAUGG- -5' |
|||||||
27564 | 3' | -50.3 | NC_005882.1 | + | 16269 | 0.66 | 0.871 |
Target: 5'- cCGACGAcGUCGAUCggCAcgauguaguuGCCG-ACCu -3' miRNA: 3'- -GCUGUUuCGGCUAGaaGU----------CGGCaUGG- -5' |
|||||||
27564 | 3' | -50.3 | NC_005882.1 | + | 13554 | 0.66 | 0.871 |
Target: 5'- aUGACGAugcGCuCGAUCUUC-GCCG-ACa -3' miRNA: 3'- -GCUGUUu--CG-GCUAGAAGuCGGCaUGg -5' |
|||||||
27564 | 3' | -50.3 | NC_005882.1 | + | 17673 | 0.72 | 0.547106 |
Target: 5'- uGGCGAAcGUCGAcgaUCGGCCGUACUg -3' miRNA: 3'- gCUGUUU-CGGCUagaAGUCGGCAUGG- -5' |
|||||||
27564 | 3' | -50.3 | NC_005882.1 | + | 21202 | 0.66 | 0.878415 |
Target: 5'- uCGACGAGcauGCCGAggucgagUCggacgCGGCCG-GCCa -3' miRNA: 3'- -GCUGUUU---CGGCU-------AGaa---GUCGGCaUGG- -5' |
|||||||
27564 | 3' | -50.3 | NC_005882.1 | + | 12157 | 0.69 | 0.742545 |
Target: 5'- cCGGCcGAGCUGggCgaggcgCAGCCGUucaACCc -3' miRNA: 3'- -GCUGuUUCGGCuaGaa----GUCGGCA---UGG- -5' |
|||||||
27564 | 3' | -50.3 | NC_005882.1 | + | 30537 | 0.7 | 0.685958 |
Target: 5'- cCGACAAGGUgaCGGUCgaCGuGCCGgagACCg -3' miRNA: 3'- -GCUGUUUCG--GCUAGaaGU-CGGCa--UGG- -5' |
|||||||
27564 | 3' | -50.3 | NC_005882.1 | + | 20478 | 0.68 | 0.796007 |
Target: 5'- aCGGCAAGGaagCGAUCcgcacgaagaUCGGCCGccgGCCg -3' miRNA: 3'- -GCUGUUUCg--GCUAGa---------AGUCGGCa--UGG- -5' |
|||||||
27564 | 3' | -50.3 | NC_005882.1 | + | 13714 | 0.68 | 0.785646 |
Target: 5'- uCGAUugcGAGCCGGgcaUCgcgCGGCCG-GCCa -3' miRNA: 3'- -GCUGu--UUCGGCU---AGaa-GUCGGCaUGG- -5' |
|||||||
27564 | 3' | -50.3 | NC_005882.1 | + | 17862 | 0.68 | 0.775105 |
Target: 5'- -uGCGAGGCaucaaGGUCgaggCGGCCGgcgACCg -3' miRNA: 3'- gcUGUUUCGg----CUAGaa--GUCGGCa--UGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home