Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27565 | 5' | -56.6 | NC_005882.1 | + | 1626 | 0.66 | 0.507729 |
Target: 5'- uCGucGAGCUGCgCGGCGaCGC-CCGAUGc -3' miRNA: 3'- -GCu-UUCGAUG-GCCGCcGUGcGGCUAU- -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 3364 | 0.7 | 0.280219 |
Target: 5'- gCGGccuGGGCUACC-GCGuGCugGCCGAa- -3' miRNA: 3'- -GCU---UUCGAUGGcCGC-CGugCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 3453 | 0.69 | 0.343223 |
Target: 5'- gCGAAGucuGCUGCCuGaCGGCACGCgGGUu -3' miRNA: 3'- -GCUUU---CGAUGGcC-GCCGUGCGgCUAu -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 4740 | 0.69 | 0.350919 |
Target: 5'- aCGAucgcgucGAGCUGCUcuuGCGGUACGCCGu-- -3' miRNA: 3'- -GCU-------UUCGAUGGc--CGCCGUGCGGCuau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 4870 | 0.69 | 0.326562 |
Target: 5'- -cGAAGCUGCCGGCGucgacuggaGCGCGgaCCGGUu -3' miRNA: 3'- gcUUUCGAUGGCCGC---------CGUGC--GGCUAu -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 5079 | 0.71 | 0.273024 |
Target: 5'- gCGcuGGCgUAUCGGCGuGC-CGCCGGUAg -3' miRNA: 3'- -GCuuUCG-AUGGCCGC-CGuGCGGCUAU- -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 5150 | 1.06 | 0.000624 |
Target: 5'- gCGAAAGCUACCGGCGGCACGCCGAUAc -3' miRNA: 3'- -GCUUUCGAUGGCCGCCGUGCGGCUAU- -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 10975 | 0.7 | 0.310508 |
Target: 5'- aCGAAGcguGUUGCUGGCGGUGCGCagCGAa- -3' miRNA: 3'- -GCUUU---CGAUGGCCGCCGUGCG--GCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 12060 | 0.7 | 0.287565 |
Target: 5'- gGAGAGCcGCUGGCGcGCggACGCCGu-- -3' miRNA: 3'- gCUUUCGaUGGCCGC-CG--UGCGGCuau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 12332 | 0.79 | 0.068328 |
Target: 5'- uGAcGGCUGCCGGCGGC--GCCGAUc -3' miRNA: 3'- gCUuUCGAUGGCCGCCGugCGGCUAu -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 12585 | 0.72 | 0.203422 |
Target: 5'- gCGGucGCUuucuUCGGCGGCuaucACGCCGGUGc -3' miRNA: 3'- -GCUuuCGAu---GGCCGCCG----UGCGGCUAU- -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 12713 | 0.66 | 0.529347 |
Target: 5'- gGAGAcGCagcGCgCGGCGGCGCucGCCGGc- -3' miRNA: 3'- gCUUU-CGa--UG-GCCGCCGUG--CGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 12790 | 0.67 | 0.435376 |
Target: 5'- gCGAAcaGGUcGCCGGCGaGCGcCGCCGc-- -3' miRNA: 3'- -GCUU--UCGaUGGCCGC-CGU-GCGGCuau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 12944 | 0.68 | 0.378351 |
Target: 5'- -cGGAGCUguugcGCCGGCc-CGCGCCGAUGa -3' miRNA: 3'- gcUUUCGA-----UGGCCGccGUGCGGCUAU- -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 13086 | 0.66 | 0.49706 |
Target: 5'- uCGAugucgcGGCUGC-GGCGGCugGCGUCGAc- -3' miRNA: 3'- -GCUu-----UCGAUGgCCGCCG--UGCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 14205 | 0.7 | 0.280219 |
Target: 5'- gCGGAAGCgGCCGccGCGGC-CGUCGAc- -3' miRNA: 3'- -GCUUUCGaUGGC--CGCCGuGCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 16074 | 0.68 | 0.396798 |
Target: 5'- aCGGccGcCUugCGGCGGCGCacgcacccGCCGAc- -3' miRNA: 3'- -GCUuuC-GAugGCCGCCGUG--------CGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 16593 | 0.71 | 0.259079 |
Target: 5'- aGGAAGCaGCCGGCaagaccGGUAgCGCCGAc- -3' miRNA: 3'- gCUUUCGaUGGCCG------CCGU-GCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 16893 | 0.66 | 0.517413 |
Target: 5'- gCGAccaaAAGCUgacgcaaGCCGGCGcGCguuucACGCCGGc- -3' miRNA: 3'- -GCU----UUCGA-------UGGCCGC-CG-----UGCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 16978 | 0.72 | 0.220721 |
Target: 5'- uGAAAuaUGCCGGCGugaaacGCGCGCCGGc- -3' miRNA: 3'- gCUUUcgAUGGCCGC------CGUGCGGCUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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