miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27565 5' -56.6 NC_005882.1 + 12332 0.79 0.068328
Target:  5'- uGAcGGCUGCCGGCGGC--GCCGAUc -3'
miRNA:   3'- gCUuUCGAUGGCCGCCGugCGGCUAu -5'
27565 5' -56.6 NC_005882.1 + 12713 0.66 0.529347
Target:  5'- gGAGAcGCagcGCgCGGCGGCGCucGCCGGc- -3'
miRNA:   3'- gCUUU-CGa--UG-GCCGCCGUG--CGGCUau -5'
27565 5' -56.6 NC_005882.1 + 26151 0.66 0.518493
Target:  5'- gCGAAGGC-GCCGGCaguGGCGacgaaGCCGu-- -3'
miRNA:   3'- -GCUUUCGaUGGCCG---CCGUg----CGGCuau -5'
27565 5' -56.6 NC_005882.1 + 16893 0.66 0.517413
Target:  5'- gCGAccaaAAGCUgacgcaaGCCGGCGcGCguuucACGCCGGc- -3'
miRNA:   3'- -GCU----UUCGA-------UGGCCGC-CG-----UGCGGCUau -5'
27565 5' -56.6 NC_005882.1 + 31961 0.66 0.476035
Target:  5'- cCGAcGAGCgu-CGGCGGC-CGCUGAc- -3'
miRNA:   3'- -GCU-UUCGaugGCCGCCGuGCGGCUau -5'
27565 5' -56.6 NC_005882.1 + 28033 0.66 0.474995
Target:  5'- cCGGAAGCcgaGCUGGCGaagcugcGCGCGgCGGUGa -3'
miRNA:   3'- -GCUUUCGa--UGGCCGC-------CGUGCgGCUAU- -5'
27565 5' -56.6 NC_005882.1 + 29867 0.67 0.455461
Target:  5'- -cGAAGCUgGCCGcCGGUGCGUCGAUc -3'
miRNA:   3'- gcUUUCGA-UGGCcGCCGUGCGGCUAu -5'
27565 5' -56.6 NC_005882.1 + 32601 0.67 0.445355
Target:  5'- uCGAGGGC-AUCGGUGGCGCcuacuaCGAUGg -3'
miRNA:   3'- -GCUUUCGaUGGCCGCCGUGcg----GCUAU- -5'
27565 5' -56.6 NC_005882.1 + 12944 0.68 0.378351
Target:  5'- -cGGAGCUguugcGCCGGCc-CGCGCCGAUGa -3'
miRNA:   3'- gcUUUCGA-----UGGCCGccGUGCGGCUAU- -5'
27565 5' -56.6 NC_005882.1 + 4740 0.69 0.350919
Target:  5'- aCGAucgcgucGAGCUGCUcuuGCGGUACGCCGu-- -3'
miRNA:   3'- -GCU-------UUCGAUGGc--CGCCGUGCGGCuau -5'
27565 5' -56.6 NC_005882.1 + 21249 0.69 0.326562
Target:  5'- cCGAAGGCaACCGGCgcaucgaacGGCuacGCGCuCGAUGc -3'
miRNA:   3'- -GCUUUCGaUGGCCG---------CCG---UGCG-GCUAU- -5'
27565 5' -56.6 NC_005882.1 + 12585 0.72 0.203422
Target:  5'- gCGGucGCUuucuUCGGCGGCuaucACGCCGGUGc -3'
miRNA:   3'- -GCUuuCGAu---GGCCGCCG----UGCGGCUAU- -5'
27565 5' -56.6 NC_005882.1 + 17159 0.72 0.232938
Target:  5'- cCGAcGAGCUGCuCGGCauGCugGCCGAg- -3'
miRNA:   3'- -GCU-UUCGAUG-GCCGc-CGugCGGCUau -5'
27565 5' -56.6 NC_005882.1 + 16593 0.71 0.259079
Target:  5'- aGGAAGCaGCCGGCaagaccGGUAgCGCCGAc- -3'
miRNA:   3'- gCUUUCGaUGGCCG------CCGU-GCGGCUau -5'
27565 5' -56.6 NC_005882.1 + 5079 0.71 0.273024
Target:  5'- gCGcuGGCgUAUCGGCGuGC-CGCCGGUAg -3'
miRNA:   3'- -GCuuUCG-AUGGCCGC-CGuGCGGCUAU- -5'
27565 5' -56.6 NC_005882.1 + 14205 0.7 0.280219
Target:  5'- gCGGAAGCgGCCGccGCGGC-CGUCGAc- -3'
miRNA:   3'- -GCUUUCGaUGGC--CGCCGuGCGGCUau -5'
27565 5' -56.6 NC_005882.1 + 12060 0.7 0.287565
Target:  5'- gGAGAGCcGCUGGCGcGCggACGCCGu-- -3'
miRNA:   3'- gCUUUCGaUGGCCGC-CG--UGCGGCuau -5'
27565 5' -56.6 NC_005882.1 + 10975 0.7 0.310508
Target:  5'- aCGAAGcguGUUGCUGGCGGUGCGCagCGAa- -3'
miRNA:   3'- -GCUUU---CGAUGGCCGCCGUGCG--GCUau -5'
27565 5' -56.6 NC_005882.1 + 1626 0.66 0.507729
Target:  5'- uCGucGAGCUGCgCGGCGaCGC-CCGAUGc -3'
miRNA:   3'- -GCu-UUCGAUG-GCCGCcGUGcGGCUAU- -5'
27565 5' -56.6 NC_005882.1 + 28699 0.76 0.109258
Target:  5'- uCGAGAGCUgGCCcGCGGCccggucgauuGCGCCGGUAa -3'
miRNA:   3'- -GCUUUCGA-UGGcCGCCG----------UGCGGCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.