Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27565 | 5' | -56.6 | NC_005882.1 | + | 12790 | 0.67 | 0.435376 |
Target: 5'- gCGAAcaGGUcGCCGGCGaGCGcCGCCGc-- -3' miRNA: 3'- -GCUU--UCGaUGGCCGC-CGU-GCGGCuau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 31070 | 0.67 | 0.445355 |
Target: 5'- ---cGGCUcccACCGGCGGauCGCGUCGAc- -3' miRNA: 3'- gcuuUCGA---UGGCCGCC--GUGCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 31448 | 0.67 | 0.465689 |
Target: 5'- uCGcgGGCUgcGCCGGCaGCcgcgucACGCCGAc- -3' miRNA: 3'- -GCuuUCGA--UGGCCGcCG------UGCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 20373 | 0.66 | 0.483344 |
Target: 5'- uCGGucGCUGucuggaCGGCGGCuuguuccagggggaACGCCGAUu -3' miRNA: 3'- -GCUuuCGAUg-----GCCGCCG--------------UGCGGCUAu -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 18830 | 0.66 | 0.49706 |
Target: 5'- aCGAuuGC-GCCGGCGuGaUACGCgCGAUGc -3' miRNA: 3'- -GCUuuCGaUGGCCGC-C-GUGCG-GCUAU- -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 13086 | 0.66 | 0.49706 |
Target: 5'- uCGAugucgcGGCUGC-GGCGGCugGCGUCGAc- -3' miRNA: 3'- -GCUu-----UCGAUGgCCGCCG--UGCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 19090 | 0.66 | 0.507729 |
Target: 5'- uGcAGGUUGCCGGCcG-ACGCCGAg- -3' miRNA: 3'- gCuUUCGAUGGCCGcCgUGCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 3453 | 0.69 | 0.343223 |
Target: 5'- gCGAAGucuGCUGCCuGaCGGCACGCgGGUu -3' miRNA: 3'- -GCUUU---CGAUGGcC-GCCGUGCGgCUAu -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 28315 | 0.69 | 0.342376 |
Target: 5'- ---cGGCcGCCGGCGGCACcuugggcuguacgGCCGGc- -3' miRNA: 3'- gcuuUCGaUGGCCGCCGUG-------------CGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 5150 | 1.06 | 0.000624 |
Target: 5'- gCGAAAGCUACCGGCGGCACGCCGAUAc -3' miRNA: 3'- -GCUUUCGAUGGCCGCCGUGCGGCUAU- -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 28699 | 0.76 | 0.109258 |
Target: 5'- uCGAGAGCUgGCCcGCGGCccggucgauuGCGCCGGUAa -3' miRNA: 3'- -GCUUUCGA-UGGcCGCCG----------UGCGGCUAU- -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 16978 | 0.72 | 0.220721 |
Target: 5'- uGAAAuaUGCCGGCGugaaacGCGCGCCGGc- -3' miRNA: 3'- gCUUUcgAUGGCCGC------CGUGCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 25404 | 0.71 | 0.265977 |
Target: 5'- -cGAAGCUACCGaguaGCGuCGCGCCGAUc -3' miRNA: 3'- gcUUUCGAUGGC----CGCcGUGCGGCUAu -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 3364 | 0.7 | 0.280219 |
Target: 5'- gCGGccuGGGCUACC-GCGuGCugGCCGAa- -3' miRNA: 3'- -GCU---UUCGAUGGcCGC-CGugCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 32183 | 0.7 | 0.287565 |
Target: 5'- aCGAuaucGCgccccagGCCGGCGGCACGaUCGGUu -3' miRNA: 3'- -GCUuu--CGa------UGGCCGCCGUGC-GGCUAu -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 20496 | 0.7 | 0.290545 |
Target: 5'- gGAucGCUGCCGGCcgcggugaacuucucGGuCGCGCUGAg- -3' miRNA: 3'- gCUuuCGAUGGCCG---------------CC-GUGCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 21103 | 0.7 | 0.310508 |
Target: 5'- uGGAAGCgguucagGCCGGCGGCA-G-CGGUAa -3' miRNA: 3'- gCUUUCGa------UGGCCGCCGUgCgGCUAU- -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 4870 | 0.69 | 0.326562 |
Target: 5'- -cGAAGCUGCCGGCGucgacuggaGCGCGgaCCGGUu -3' miRNA: 3'- gcUUUCGAUGGCCGC---------CGUGC--GGCUAu -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 1626 | 0.66 | 0.507729 |
Target: 5'- uCGucGAGCUGCgCGGCGaCGC-CCGAUGc -3' miRNA: 3'- -GCu-UUCGAUG-GCCGCcGUGcGGCUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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