Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27565 | 5' | -56.6 | NC_005882.1 | + | 17159 | 0.72 | 0.232938 |
Target: 5'- cCGAcGAGCUGCuCGGCauGCugGCCGAg- -3' miRNA: 3'- -GCU-UUCGAUG-GCCGc-CGugCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 18830 | 0.66 | 0.49706 |
Target: 5'- aCGAuuGC-GCCGGCGuGaUACGCgCGAUGc -3' miRNA: 3'- -GCUuuCGaUGGCCGC-C-GUGCG-GCUAU- -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 19090 | 0.66 | 0.507729 |
Target: 5'- uGcAGGUUGCCGGCcG-ACGCCGAg- -3' miRNA: 3'- gCuUUCGAUGGCCGcCgUGCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 20373 | 0.66 | 0.483344 |
Target: 5'- uCGGucGCUGucuggaCGGCGGCuuguuccagggggaACGCCGAUu -3' miRNA: 3'- -GCUuuCGAUg-----GCCGCCG--------------UGCGGCUAu -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 20496 | 0.7 | 0.290545 |
Target: 5'- gGAucGCUGCCGGCcgcggugaacuucucGGuCGCGCUGAg- -3' miRNA: 3'- gCUuuCGAUGGCCG---------------CC-GUGCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 20947 | 0.68 | 0.369346 |
Target: 5'- aGAucAGGUaGCCGGCGucCGCGCCGAg- -3' miRNA: 3'- gCU--UUCGaUGGCCGCc-GUGCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 21103 | 0.7 | 0.310508 |
Target: 5'- uGGAAGCgguucagGCCGGCGGCA-G-CGGUAa -3' miRNA: 3'- gCUUUCGa------UGGCCGCCGUgCgGCUAU- -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 21249 | 0.69 | 0.326562 |
Target: 5'- cCGAAGGCaACCGGCgcaucgaacGGCuacGCGCuCGAUGc -3' miRNA: 3'- -GCUUUCGaUGGCCG---------CCG---UGCG-GCUAU- -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 25404 | 0.71 | 0.265977 |
Target: 5'- -cGAAGCUACCGaguaGCGuCGCGCCGAUc -3' miRNA: 3'- gcUUUCGAUGGC----CGCcGUGCGGCUAu -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 26151 | 0.66 | 0.518493 |
Target: 5'- gCGAAGGC-GCCGGCaguGGCGacgaaGCCGu-- -3' miRNA: 3'- -GCUUUCGaUGGCCG---CCGUg----CGGCuau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 28033 | 0.66 | 0.474995 |
Target: 5'- cCGGAAGCcgaGCUGGCGaagcugcGCGCGgCGGUGa -3' miRNA: 3'- -GCUUUCGa--UGGCCGC-------CGUGCgGCUAU- -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 28315 | 0.69 | 0.342376 |
Target: 5'- ---cGGCcGCCGGCGGCACcuugggcuguacgGCCGGc- -3' miRNA: 3'- gcuuUCGaUGGCCGCCGUG-------------CGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 28699 | 0.76 | 0.109258 |
Target: 5'- uCGAGAGCUgGCCcGCGGCccggucgauuGCGCCGGUAa -3' miRNA: 3'- -GCUUUCGA-UGGcCGCCG----------UGCGGCUAU- -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 29867 | 0.67 | 0.455461 |
Target: 5'- -cGAAGCUgGCCGcCGGUGCGUCGAUc -3' miRNA: 3'- gcUUUCGA-UGGCcGCCGUGCGGCUAu -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 31070 | 0.67 | 0.445355 |
Target: 5'- ---cGGCUcccACCGGCGGauCGCGUCGAc- -3' miRNA: 3'- gcuuUCGA---UGGCCGCC--GUGCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 31448 | 0.67 | 0.465689 |
Target: 5'- uCGcgGGCUgcGCCGGCaGCcgcgucACGCCGAc- -3' miRNA: 3'- -GCuuUCGA--UGGCCGcCG------UGCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 31961 | 0.66 | 0.476035 |
Target: 5'- cCGAcGAGCgu-CGGCGGC-CGCUGAc- -3' miRNA: 3'- -GCU-UUCGaugGCCGCCGuGCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 32183 | 0.7 | 0.287565 |
Target: 5'- aCGAuaucGCgccccagGCCGGCGGCACGaUCGGUu -3' miRNA: 3'- -GCUuu--CGa------UGGCCGCCGUGC-GGCUAu -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 32601 | 0.67 | 0.445355 |
Target: 5'- uCGAGGGC-AUCGGUGGCGCcuacuaCGAUGg -3' miRNA: 3'- -GCUUUCGaUGGCCGCCGUGcg----GCUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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