Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27565 | 5' | -56.6 | NC_005882.1 | + | 28315 | 0.69 | 0.342376 |
Target: 5'- ---cGGCcGCCGGCGGCACcuugggcuguacgGCCGGc- -3' miRNA: 3'- gcuuUCGaUGGCCGCCGUG-------------CGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 21249 | 0.69 | 0.326562 |
Target: 5'- cCGAAGGCaACCGGCgcaucgaacGGCuacGCGCuCGAUGc -3' miRNA: 3'- -GCUUUCGaUGGCCG---------CCG---UGCG-GCUAU- -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 4870 | 0.69 | 0.326562 |
Target: 5'- -cGAAGCUGCCGGCGucgacuggaGCGCGgaCCGGUu -3' miRNA: 3'- gcUUUCGAUGGCCGC---------CGUGC--GGCUAu -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 10975 | 0.7 | 0.310508 |
Target: 5'- aCGAAGcguGUUGCUGGCGGUGCGCagCGAa- -3' miRNA: 3'- -GCUUU---CGAUGGCCGCCGUGCG--GCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 21103 | 0.7 | 0.310508 |
Target: 5'- uGGAAGCgguucagGCCGGCGGCA-G-CGGUAa -3' miRNA: 3'- gCUUUCGa------UGGCCGCCGUgCgGCUAU- -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 20496 | 0.7 | 0.290545 |
Target: 5'- gGAucGCUGCCGGCcgcggugaacuucucGGuCGCGCUGAg- -3' miRNA: 3'- gCUuuCGAUGGCCG---------------CC-GUGCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 32183 | 0.7 | 0.287565 |
Target: 5'- aCGAuaucGCgccccagGCCGGCGGCACGaUCGGUu -3' miRNA: 3'- -GCUuu--CGa------UGGCCGCCGUGC-GGCUAu -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 12060 | 0.7 | 0.287565 |
Target: 5'- gGAGAGCcGCUGGCGcGCggACGCCGu-- -3' miRNA: 3'- gCUUUCGaUGGCCGC-CG--UGCGGCuau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 3364 | 0.7 | 0.280219 |
Target: 5'- gCGGccuGGGCUACC-GCGuGCugGCCGAa- -3' miRNA: 3'- -GCU---UUCGAUGGcCGC-CGugCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 14205 | 0.7 | 0.280219 |
Target: 5'- gCGGAAGCgGCCGccGCGGC-CGUCGAc- -3' miRNA: 3'- -GCUUUCGaUGGC--CGCCGuGCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 5079 | 0.71 | 0.273024 |
Target: 5'- gCGcuGGCgUAUCGGCGuGC-CGCCGGUAg -3' miRNA: 3'- -GCuuUCG-AUGGCCGC-CGuGCGGCUAU- -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 25404 | 0.71 | 0.265977 |
Target: 5'- -cGAAGCUACCGaguaGCGuCGCGCCGAUc -3' miRNA: 3'- gcUUUCGAUGGC----CGCcGUGCGGCUAu -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 16593 | 0.71 | 0.259079 |
Target: 5'- aGGAAGCaGCCGGCaagaccGGUAgCGCCGAc- -3' miRNA: 3'- gCUUUCGaUGGCCG------CCGU-GCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 17159 | 0.72 | 0.232938 |
Target: 5'- cCGAcGAGCUGCuCGGCauGCugGCCGAg- -3' miRNA: 3'- -GCU-UUCGAUG-GCCGc-CGugCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 16978 | 0.72 | 0.220721 |
Target: 5'- uGAAAuaUGCCGGCGugaaacGCGCGCCGGc- -3' miRNA: 3'- gCUUUcgAUGGCCGC------CGUGCGGCUau -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 12585 | 0.72 | 0.203422 |
Target: 5'- gCGGucGCUuucuUCGGCGGCuaucACGCCGGUGc -3' miRNA: 3'- -GCUuuCGAu---GGCCGCCG----UGCGGCUAU- -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 28699 | 0.76 | 0.109258 |
Target: 5'- uCGAGAGCUgGCCcGCGGCccggucgauuGCGCCGGUAa -3' miRNA: 3'- -GCUUUCGA-UGGcCGCCG----------UGCGGCUAU- -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 12332 | 0.79 | 0.068328 |
Target: 5'- uGAcGGCUGCCGGCGGC--GCCGAUc -3' miRNA: 3'- gCUuUCGAUGGCCGCCGugCGGCUAu -5' |
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27565 | 5' | -56.6 | NC_005882.1 | + | 5150 | 1.06 | 0.000624 |
Target: 5'- gCGAAAGCUACCGGCGGCACGCCGAUAc -3' miRNA: 3'- -GCUUUCGAUGGCCGCCGUGCGGCUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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