miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27566 3' -53.1 NC_005882.1 + 6728 1.14 0.000458
Target:  5'- cGCCUUCGAAACCUUGGCGCAGCACGCc -3'
miRNA:   3'- -CGGAAGCUUUGGAACCGCGUCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 26985 0.8 0.118216
Target:  5'- uGCCg--GGAGCCUguuuaugggauucgGGCGCGGCGCGCu -3'
miRNA:   3'- -CGGaagCUUUGGAa-------------CCGCGUCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 14176 0.79 0.135228
Target:  5'- uUCUUCGcgGCCUUGGacaGCAGCGCGa -3'
miRNA:   3'- cGGAAGCuuUGGAACCg--CGUCGUGCg -5'
27566 3' -53.1 NC_005882.1 + 21293 0.79 0.143306
Target:  5'- uGCCUUCGGAAUggCUUGGC-CGGC-CGCg -3'
miRNA:   3'- -CGGAAGCUUUG--GAACCGcGUCGuGCG- -5'
27566 3' -53.1 NC_005882.1 + 20244 0.77 0.190643
Target:  5'- --aUUCGAuucGACCggGcGCGCAGCGCGCg -3'
miRNA:   3'- cggAAGCU---UUGGaaC-CGCGUCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 13860 0.74 0.286221
Target:  5'- cGCUUUCGAGccauucgcgcacgGCCUUcggcaGGCGUuGCACGCc -3'
miRNA:   3'- -CGGAAGCUU-------------UGGAA-----CCGCGuCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 23827 0.73 0.318424
Target:  5'- gGCCggaUCGAAccauGCCUUGaaGCcgaGCAGCGCGCc -3'
miRNA:   3'- -CGGa--AGCUU----UGGAAC--CG---CGUCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 15595 0.72 0.361277
Target:  5'- cGUCUUCGAAcgccGCCUUcacGG-GCGGCAUGUg -3'
miRNA:   3'- -CGGAAGCUU----UGGAA---CCgCGUCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 3592 0.72 0.370316
Target:  5'- gGUCaUCGuGAGCCgaGuGCGCAGCGCGUc -3'
miRNA:   3'- -CGGaAGC-UUUGGaaC-CGCGUCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 19284 0.72 0.370316
Target:  5'- gGCCaa-GAAcucaaugcggGCCUcUGGCGCAGCcuGCGCg -3'
miRNA:   3'- -CGGaagCUU----------UGGA-ACCGCGUCG--UGCG- -5'
27566 3' -53.1 NC_005882.1 + 3278 0.72 0.379507
Target:  5'- cGCCgucgcgcggCGAGAUCUcuucGGC-CAGCACGCg -3'
miRNA:   3'- -CGGaa-------GCUUUGGAa---CCGcGUCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 22086 0.71 0.427695
Target:  5'- aGCacgUCGAuggcaccgccgcGGCCguugagcUGGCGCAGCACGa -3'
miRNA:   3'- -CGga-AGCU------------UUGGa------ACCGCGUCGUGCg -5'
27566 3' -53.1 NC_005882.1 + 12006 0.71 0.436747
Target:  5'- cGCC-UCGGcgggcacuugcgcGGCCacgGGCGCGGCgGCGCc -3'
miRNA:   3'- -CGGaAGCU-------------UUGGaa-CCGCGUCG-UGCG- -5'
27566 3' -53.1 NC_005882.1 + 10969 0.71 0.43776
Target:  5'- uGCCggaCGAAGCgUguugcUGGCGguGCGCaGCg -3'
miRNA:   3'- -CGGaa-GCUUUGgA-----ACCGCguCGUG-CG- -5'
27566 3' -53.1 NC_005882.1 + 23201 0.7 0.458289
Target:  5'- cGCCUccagcUCGAccgaGACCgaguucUGcGUGCAGUACGCc -3'
miRNA:   3'- -CGGA-----AGCU----UUGGa-----AC-CGCGUCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 26195 0.7 0.468744
Target:  5'- cGCCUUCGcgGCCgacuucgaggcUGGCGaugaucugcguCAGCGCGUc -3'
miRNA:   3'- -CGGAAGCuuUGGa----------ACCGC-----------GUCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 4879 0.7 0.478257
Target:  5'- gGCCgcugUCGAAGCUgccGGCGUcgacuggAGCGCGg -3'
miRNA:   3'- -CGGa---AGCUUUGGaa-CCGCG-------UCGUGCg -5'
27566 3' -53.1 NC_005882.1 + 23267 0.7 0.47932
Target:  5'- cGCCUgcgCGAGcgucguGCCgaucGGCGCAucgauGUACGCg -3'
miRNA:   3'- -CGGAa--GCUU------UGGaa--CCGCGU-----CGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 25698 0.7 0.47932
Target:  5'- aCCUUCGAAGCCggccuGCGCGaCAuCGCg -3'
miRNA:   3'- cGGAAGCUUUGGaac--CGCGUcGU-GCG- -5'
27566 3' -53.1 NC_005882.1 + 29676 0.7 0.490012
Target:  5'- cGUUUUCGGguugugguagccGACCUUGGC-CuGCGCGUa -3'
miRNA:   3'- -CGGAAGCU------------UUGGAACCGcGuCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.