miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27566 3' -53.1 NC_005882.1 + 18621 0.66 0.727261
Target:  5'- cGCCgcuaaccugUCGAcgAGCCgaucGCGCucuGCGCGCc -3'
miRNA:   3'- -CGGa--------AGCU--UUGGaac-CGCGu--CGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 12370 0.67 0.670782
Target:  5'- gGCCaugUCGAGcgguucaacGCC--GGC-CGGCACGCg -3'
miRNA:   3'- -CGGa--AGCUU---------UGGaaCCGcGUCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 25351 0.67 0.682208
Target:  5'- cGCUacUCGGuAGCUUcGGCGCcgcgcuuuccGGCACGCg -3'
miRNA:   3'- -CGGa-AGCU-UUGGAaCCGCG----------UCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 21074 0.67 0.682208
Target:  5'- cGgCUUCGAugguGGCg-UGuGCGCAGCcgGCGCg -3'
miRNA:   3'- -CgGAAGCU----UUGgaAC-CGCGUCG--UGCG- -5'
27566 3' -53.1 NC_005882.1 + 25562 0.66 0.693581
Target:  5'- gGCCcUUGcGACCcggcUGGCGCgcGGCGcCGCg -3'
miRNA:   3'- -CGGaAGCuUUGGa---ACCGCG--UCGU-GCG- -5'
27566 3' -53.1 NC_005882.1 + 2046 0.66 0.701505
Target:  5'- uGCCUccagccagcgcggaUCGGugauguCCaaucGGCGCAGCGCGa -3'
miRNA:   3'- -CGGA--------------AGCUuu----GGaa--CCGCGUCGUGCg -5'
27566 3' -53.1 NC_005882.1 + 4909 0.66 0.716121
Target:  5'- cGUgUUCcguGCCgcGGCGCGGCAgGUa -3'
miRNA:   3'- -CGgAAGcuuUGGaaCCGCGUCGUgCG- -5'
27566 3' -53.1 NC_005882.1 + 30005 0.66 0.716121
Target:  5'- cGCCgUCcAGGCCggcaaaGGCgGCGGCACcGCg -3'
miRNA:   3'- -CGGaAGcUUUGGaa----CCG-CGUCGUG-CG- -5'
27566 3' -53.1 NC_005882.1 + 16529 0.66 0.727261
Target:  5'- uGCCUUgaGGACa-UGGUGCAGgAUGCu -3'
miRNA:   3'- -CGGAAgcUUUGgaACCGCGUCgUGCG- -5'
27566 3' -53.1 NC_005882.1 + 25446 0.67 0.670782
Target:  5'- cGCCUggGGGACgCgaUGGCGCGgGCcguuGCGCa -3'
miRNA:   3'- -CGGAagCUUUG-Ga-ACCGCGU-CG----UGCG- -5'
27566 3' -53.1 NC_005882.1 + 32982 0.67 0.647824
Target:  5'- gGCCgcacgCGcuACCUgaaGGCGCAGguCGa -3'
miRNA:   3'- -CGGaa---GCuuUGGAa--CCGCGUCguGCg -5'
27566 3' -53.1 NC_005882.1 + 31374 0.67 0.636315
Target:  5'- aGCUggUCGGcgugacgcGGCUgccGGCGCAGCcCGCg -3'
miRNA:   3'- -CGGa-AGCU--------UUGGaa-CCGCGUCGuGCG- -5'
27566 3' -53.1 NC_005882.1 + 3592 0.72 0.370316
Target:  5'- gGUCaUCGuGAGCCgaGuGCGCAGCGCGUc -3'
miRNA:   3'- -CGGaAGC-UUUGGaaC-CGCGUCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 19284 0.72 0.370316
Target:  5'- gGCCaa-GAAcucaaugcggGCCUcUGGCGCAGCcuGCGCg -3'
miRNA:   3'- -CGGaagCUU----------UGGA-ACCGCGUCG--UGCG- -5'
27566 3' -53.1 NC_005882.1 + 3278 0.72 0.379507
Target:  5'- cGCCgucgcgcggCGAGAUCUcuucGGC-CAGCACGCg -3'
miRNA:   3'- -CGGaa-------GCUUUGGAa---CCGcGUCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 10969 0.71 0.43776
Target:  5'- uGCCggaCGAAGCgUguugcUGGCGguGCGCaGCg -3'
miRNA:   3'- -CGGaa-GCUUUGgA-----ACCGCguCGUG-CG- -5'
27566 3' -53.1 NC_005882.1 + 25698 0.7 0.47932
Target:  5'- aCCUUCGAAGCCggccuGCGCGaCAuCGCg -3'
miRNA:   3'- cGGAAGCUUUGGaac--CGCGUcGU-GCG- -5'
27566 3' -53.1 NC_005882.1 + 28043 0.69 0.522721
Target:  5'- aGCUggCGAAGCUgc-GCGCGGCggugaGCGCa -3'
miRNA:   3'- -CGGaaGCUUUGGaacCGCGUCG-----UGCG- -5'
27566 3' -53.1 NC_005882.1 + 19771 0.69 0.556238
Target:  5'- uGCCgaaggucgUCGAA--UUUGGCG-AGCACGCc -3'
miRNA:   3'- -CGGa-------AGCUUugGAACCGCgUCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 10864 0.68 0.613295
Target:  5'- uGCUguccgCGAucAACCUggucgUGGguucguCGCAGCGCGCg -3'
miRNA:   3'- -CGGaa---GCU--UUGGA-----ACC------GCGUCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.