miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27566 3' -53.1 NC_005882.1 + 202 0.68 0.578927
Target:  5'- uGCCUUCG--GCCUga-CGCGGCccuCGCg -3'
miRNA:   3'- -CGGAAGCuuUGGAaccGCGUCGu--GCG- -5'
27566 3' -53.1 NC_005882.1 + 904 0.66 0.727261
Target:  5'- gGUCUgagGAAGCgCUUGGCGCuuucGUaaaGCGCa -3'
miRNA:   3'- -CGGAag-CUUUG-GAACCGCGu---CG---UGCG- -5'
27566 3' -53.1 NC_005882.1 + 2046 0.66 0.701505
Target:  5'- uGCCUccagccagcgcggaUCGGugauguCCaaucGGCGCAGCGCGa -3'
miRNA:   3'- -CGGA--------------AGCUuu----GGaa--CCGCGUCGUGCg -5'
27566 3' -53.1 NC_005882.1 + 3278 0.72 0.379507
Target:  5'- cGCCgucgcgcggCGAGAUCUcuucGGC-CAGCACGCg -3'
miRNA:   3'- -CGGaa-------GCUUUGGAa---CCGcGUCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 3592 0.72 0.370316
Target:  5'- gGUCaUCGuGAGCCgaGuGCGCAGCGCGUc -3'
miRNA:   3'- -CGGaAGC-UUUGGaaC-CGCGUCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 4879 0.7 0.478257
Target:  5'- gGCCgcugUCGAAGCUgccGGCGUcgacuggAGCGCGg -3'
miRNA:   3'- -CGGa---AGCUUUGGaa-CCGCG-------UCGUGCg -5'
27566 3' -53.1 NC_005882.1 + 4909 0.66 0.716121
Target:  5'- cGUgUUCcguGCCgcGGCGCGGCAgGUa -3'
miRNA:   3'- -CGgAAGcuuUGGaaCCGCGUCGUgCG- -5'
27566 3' -53.1 NC_005882.1 + 6728 1.14 0.000458
Target:  5'- cGCCUUCGAAACCUUGGCGCAGCACGCc -3'
miRNA:   3'- -CGGAAGCUUUGGAACCGCGUCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 8030 0.67 0.681067
Target:  5'- aGCC--CGAacucGACCUUGGaGCAGCcgaaugaccgcgaACGCa -3'
miRNA:   3'- -CGGaaGCU----UUGGAACCgCGUCG-------------UGCG- -5'
27566 3' -53.1 NC_005882.1 + 10864 0.68 0.613295
Target:  5'- uGCUguccgCGAucAACCUggucgUGGguucguCGCAGCGCGCg -3'
miRNA:   3'- -CGGaa---GCU--UUGGA-----ACC------GCGUCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 10969 0.71 0.43776
Target:  5'- uGCCggaCGAAGCgUguugcUGGCGguGCGCaGCg -3'
miRNA:   3'- -CGGaa-GCUUUGgA-----ACCGCguCGUG-CG- -5'
27566 3' -53.1 NC_005882.1 + 11221 0.67 0.624801
Target:  5'- cGgCUUCGA-----UGaGCGCAGCGCGUg -3'
miRNA:   3'- -CgGAAGCUuuggaAC-CGCGUCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 12006 0.71 0.436747
Target:  5'- cGCC-UCGGcgggcacuugcgcGGCCacgGGCGCGGCgGCGCc -3'
miRNA:   3'- -CGGaAGCU-------------UUGGaa-CCGCGUCG-UGCG- -5'
27566 3' -53.1 NC_005882.1 + 12370 0.67 0.670782
Target:  5'- gGCCaugUCGAGcgguucaacGCC--GGC-CGGCACGCg -3'
miRNA:   3'- -CGGa--AGCUU---------UGGaaCCGcGUCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 13698 0.67 0.659317
Target:  5'- gGCCggaCGGuuCCUU-GCGCagcuucaccAGCACGCg -3'
miRNA:   3'- -CGGaa-GCUuuGGAAcCGCG---------UCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 13860 0.74 0.286221
Target:  5'- cGCUUUCGAGccauucgcgcacgGCCUUcggcaGGCGUuGCACGCc -3'
miRNA:   3'- -CGGAAGCUU-------------UGGAA-----CCGCGuCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 14176 0.79 0.135228
Target:  5'- uUCUUCGcgGCCUUGGacaGCAGCGCGa -3'
miRNA:   3'- cGGAAGCuuUGGAACCg--CGUCGUGCg -5'
27566 3' -53.1 NC_005882.1 + 14811 0.67 0.686764
Target:  5'- cGCCaUCGcgGCCUUGaGCGCucGCcgagcugcucguggaACGCu -3'
miRNA:   3'- -CGGaAGCuuUGGAAC-CGCGu-CG---------------UGCG- -5'
27566 3' -53.1 NC_005882.1 + 15182 0.68 0.601807
Target:  5'- aCC-UCGAAACCcUGuuugcaggcccaGCGCAGCACcgGCg -3'
miRNA:   3'- cGGaAGCUUUGGaAC------------CGCGUCGUG--CG- -5'
27566 3' -53.1 NC_005882.1 + 15595 0.72 0.361277
Target:  5'- cGUCUUCGAAcgccGCCUUcacGG-GCGGCAUGUg -3'
miRNA:   3'- -CGGAAGCUU----UGGAA---CCgCGUCGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.