miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27567 5' -52.8 NC_005882.1 + 32584 0.66 0.772013
Target:  5'- uGGCGaAGUUG-AGCUUGuCGAgggcAUCGg -3'
miRNA:   3'- gCCGC-UCGACuUCGAGCuGCUa---UAGC- -5'
27567 5' -52.8 NC_005882.1 + 12574 0.66 0.772013
Target:  5'- uGGCG-GCUGgcGCggucgcuuucuUCGGCGGcUAUCa -3'
miRNA:   3'- gCCGCuCGACuuCG-----------AGCUGCU-AUAGc -5'
27567 5' -52.8 NC_005882.1 + 17832 0.66 0.772013
Target:  5'- uGGUGGcGCUGucGCaCGACGAgAUCa -3'
miRNA:   3'- gCCGCU-CGACuuCGaGCUGCUaUAGc -5'
27567 5' -52.8 NC_005882.1 + 18548 0.66 0.770963
Target:  5'- uGGCGAGCugcaaccUGAAGCggUCGAgcCGGUGcUCa -3'
miRNA:   3'- gCCGCUCG-------ACUUCG--AGCU--GCUAU-AGc -5'
27567 5' -52.8 NC_005882.1 + 24077 0.66 0.744232
Target:  5'- aGGuCGAGCUGccgggcggccuggacAAGCUCGaagGCGAgAUCa -3'
miRNA:   3'- gCC-GCUCGAC---------------UUCGAGC---UGCUaUAGc -5'
27567 5' -52.8 NC_005882.1 + 5753 0.66 0.739878
Target:  5'- aCGGUGuGCcacgcauucUGAuGCUCGACGccggAUCGg -3'
miRNA:   3'- -GCCGCuCG---------ACUuCGAGCUGCua--UAGC- -5'
27567 5' -52.8 NC_005882.1 + 21515 0.66 0.739878
Target:  5'- uGGCgcaccGAGCU----UUCGACGAUGUCGg -3'
miRNA:   3'- gCCG-----CUCGAcuucGAGCUGCUAUAGC- -5'
27567 5' -52.8 NC_005882.1 + 21979 0.66 0.728914
Target:  5'- gCGGCGAG-UGAAGUUUGccguCGcgAUCGu -3'
miRNA:   3'- -GCCGCUCgACUUCGAGCu---GCuaUAGC- -5'
27567 5' -52.8 NC_005882.1 + 540 0.66 0.728914
Target:  5'- gCGGCGAcaaccaugccgaGCUGGcacggaAGUUCGGCG-UGUCa -3'
miRNA:   3'- -GCCGCU------------CGACU------UCGAGCUGCuAUAGc -5'
27567 5' -52.8 NC_005882.1 + 29965 0.67 0.711158
Target:  5'- gCGGCuaccaaaccgaagucGAGCUGAAGCgcUCGGCGc--UCGc -3'
miRNA:   3'- -GCCG---------------CUCGACUUCG--AGCUGCuauAGC- -5'
27567 5' -52.8 NC_005882.1 + 2434 0.67 0.695444
Target:  5'- uGGuCGAGCUGAAaGCccgaauuuUCGGUGAUAUCu -3'
miRNA:   3'- gCC-GCUCGACUU-CG--------AGCUGCUAUAGc -5'
27567 5' -52.8 NC_005882.1 + 31369 0.67 0.684138
Target:  5'- uGGCGAGCUGGucGGCgUGACGcgGc-- -3'
miRNA:   3'- gCCGCUCGACU--UCGaGCUGCuaUagc -5'
27567 5' -52.8 NC_005882.1 + 22127 0.68 0.61559
Target:  5'- cCGGCGGGCgGAAGCccaccagGGCGGUG-CGa -3'
miRNA:   3'- -GCCGCUCGaCUUCGag-----CUGCUAUaGC- -5'
27567 5' -52.8 NC_005882.1 + 14748 0.68 0.61559
Target:  5'- uCGGCGAGCUGcucaAGGC-CG-CGAUggCGc -3'
miRNA:   3'- -GCCGCUCGAC----UUCGaGCuGCUAuaGC- -5'
27567 5' -52.8 NC_005882.1 + 18328 0.68 0.61559
Target:  5'- aCGGCGAGCUGAccgcGGC-CG-CGucgcGUCGc -3'
miRNA:   3'- -GCCGCUCGACU----UCGaGCuGCua--UAGC- -5'
27567 5' -52.8 NC_005882.1 + 13072 0.68 0.604156
Target:  5'- gCGGCG-GCUGGcgucgacguGGUgggCGAgGAUGUCGu -3'
miRNA:   3'- -GCCGCuCGACU---------UCGa--GCUgCUAUAGC- -5'
27567 5' -52.8 NC_005882.1 + 19762 0.69 0.570047
Target:  5'- uCGGCGAGCUgccGAAGgUCGuCGAauUUGg -3'
miRNA:   3'- -GCCGCUCGA---CUUCgAGCuGCUauAGC- -5'
27567 5' -52.8 NC_005882.1 + 13955 0.69 0.570047
Target:  5'- aGGCGAGCacgGAAGC-CGACGc-AUCc -3'
miRNA:   3'- gCCGCUCGa--CUUCGaGCUGCuaUAGc -5'
27567 5' -52.8 NC_005882.1 + 24896 0.69 0.563277
Target:  5'- uCGGCG-GCUGAucGCUgggcgcccgcauuucCGGCGGUAUCc -3'
miRNA:   3'- -GCCGCuCGACUu-CGA---------------GCUGCUAUAGc -5'
27567 5' -52.8 NC_005882.1 + 27960 0.69 0.558775
Target:  5'- gCGGCugcaacgcauGGGCgacAAGCUCGACGAgauUCGg -3'
miRNA:   3'- -GCCG----------CUCGac-UUCGAGCUGCUau-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.