Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27573 | 5' | -52.3 | NC_005882.1 | + | 8868 | 1.13 | 0.000695 |
Target: 5'- uGCAACUGUUUCGGCCACCACGUCGACa -3' miRNA: 3'- -CGUUGACAAAGCCGGUGGUGCAGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 5040 | 0.67 | 0.723606 |
Target: 5'- gGCAaggcACUGccgUUCGGCgGCCGucUCGACc -3' miRNA: 3'- -CGU----UGACa--AAGCCGgUGGUgcAGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 20388 | 0.69 | 0.609347 |
Target: 5'- cGCAACUGgaucgcUUCGGUCGCUgucuggACGgCGGCu -3' miRNA: 3'- -CGUUGACa-----AAGCCGGUGG------UGCaGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 17165 | 0.69 | 0.572686 |
Target: 5'- aGCGGCgcgaccaGcGCCugCGCGUCGGCa -3' miRNA: 3'- -CGUUGacaaag-C-CGGugGUGCAGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 26649 | 0.7 | 0.552284 |
Target: 5'- uGCGuCUGaaagCGGCC-CCACG-CGACg -3' miRNA: 3'- -CGUuGACaaa-GCCGGuGGUGCaGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 22713 | 0.71 | 0.495852 |
Target: 5'- gGCgAGCUGcg--GGCCgaacugcGCCGCGUCGACg -3' miRNA: 3'- -CG-UUGACaaagCCGG-------UGGUGCAGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 29791 | 0.66 | 0.788173 |
Target: 5'- cGCAGC-GUgUC-GCCGCU-CGUCGACu -3' miRNA: 3'- -CGUUGaCAaAGcCGGUGGuGCAGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 32057 | 0.66 | 0.745669 |
Target: 5'- uCGACcGgcgUCGGCgAUCggACGUCGACg -3' miRNA: 3'- cGUUGaCaa-AGCCGgUGG--UGCAGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 31077 | 0.68 | 0.66693 |
Target: 5'- cGCAGCg----CGGCUcccaccggcggAUCGCGUCGACc -3' miRNA: 3'- -CGUUGacaaaGCCGG-----------UGGUGCAGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 19982 | 0.69 | 0.563594 |
Target: 5'- -----cGUUcgCGGCCGCCGCGuaaUCGACc -3' miRNA: 3'- cguugaCAAa-GCCGGUGGUGC---AGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 21566 | 0.77 | 0.222141 |
Target: 5'- aGCGGCagGUUguagCGGCCGCgcaagugCGCGUCGACg -3' miRNA: 3'- -CGUUGa-CAAa---GCCGGUG-------GUGCAGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 30839 | 0.66 | 0.767226 |
Target: 5'- -gAGCUGggucaugCGGCCauguuGCCGCG-CGACc -3' miRNA: 3'- cgUUGACaaa----GCCGG-----UGGUGCaGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 13079 | 0.72 | 0.424025 |
Target: 5'- cGCGGCUG---CGGCgGCUgGCGUCGACg -3' miRNA: 3'- -CGUUGACaaaGCCGgUGG-UGCAGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 31622 | 0.68 | 0.643921 |
Target: 5'- aGCcuGCgGUUUCGcacgucGCgGCCACGUCGAUc -3' miRNA: 3'- -CGu-UGaCAAAGC------CGgUGGUGCAGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 28515 | 0.66 | 0.788173 |
Target: 5'- aGCGGCUugcuugaugUUGGUCAgCACGcUCGACg -3' miRNA: 3'- -CGUUGAcaa------AGCCGGUgGUGC-AGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 12596 | 0.71 | 0.486156 |
Target: 5'- cGCAGCgc---CGGCCGCCGcCG-CGACa -3' miRNA: 3'- -CGUUGacaaaGCCGGUGGU-GCaGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 24505 | 0.66 | 0.745669 |
Target: 5'- cGCAGgUGUggggUUaGCCGCCgAUGUUGGCg -3' miRNA: 3'- -CGUUgACAa---AGcCGGUGG-UGCAGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 31611 | 0.67 | 0.701144 |
Target: 5'- gGCAAC----UCGGCuCGCU-CGUCGACg -3' miRNA: 3'- -CGUUGacaaAGCCG-GUGGuGCAGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 18972 | 0.67 | 0.701144 |
Target: 5'- cCGAUcGUcaUCGGCCAuCCGCG-CGACa -3' miRNA: 3'- cGUUGaCAa-AGCCGGU-GGUGCaGCUG- -5' |
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27573 | 5' | -52.3 | NC_005882.1 | + | 29860 | 0.67 | 0.689796 |
Target: 5'- gGCGACacgaagcUGGCCGCCgguGCGUCGAUc -3' miRNA: 3'- -CGUUGacaaa--GCCGGUGG---UGCAGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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