miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27575 3' -55.9 NC_005882.1 + 13124 0.66 0.571066
Target:  5'- ---uGGUGUCGAUGCUcgCGACGuUCa -3'
miRNA:   3'- uagcCCACGGUUGCGGuaGCUGCuAG- -5'
27575 3' -55.9 NC_005882.1 + 31939 0.66 0.569945
Target:  5'- -gCGGGUagaccuggacgcuGCCuggcugAACGCCGUUGACGGa- -3'
miRNA:   3'- uaGCCCA-------------CGG------UUGCGGUAGCUGCUag -5'
27575 3' -55.9 NC_005882.1 + 23830 0.66 0.548765
Target:  5'- -gCGGGccggaucgaaccaUGCCuugaagccgagcagcGCGCCGUCGcCGAUCa -3'
miRNA:   3'- uaGCCC-------------ACGGu--------------UGCGGUAGCuGCUAG- -5'
27575 3' -55.9 NC_005882.1 + 16160 0.66 0.548765
Target:  5'- gGUCGaGGU-CC-GCGaagaCGUCGGCGAUCg -3'
miRNA:   3'- -UAGC-CCAcGGuUGCg---GUAGCUGCUAG- -5'
27575 3' -55.9 NC_005882.1 + 32067 0.66 0.537716
Target:  5'- gAUCGcGUaGUCGAcCGgCGUCGGCGAUCg -3'
miRNA:   3'- -UAGCcCA-CGGUU-GCgGUAGCUGCUAG- -5'
27575 3' -55.9 NC_005882.1 + 16008 0.66 0.537716
Target:  5'- -gCGGGUGCguGCGCCGccgcaaGGCGGc- -3'
miRNA:   3'- uaGCCCACGguUGCGGUag----CUGCUag -5'
27575 3' -55.9 NC_005882.1 + 23442 0.67 0.483773
Target:  5'- -aCGGGcGUCGAgcggcCGCUGUCGGCGAUg -3'
miRNA:   3'- uaGCCCaCGGUU-----GCGGUAGCUGCUAg -5'
27575 3' -55.9 NC_005882.1 + 18188 0.67 0.452678
Target:  5'- -gCGcGUGCgCAGCGCCGagUCGuCGAUCu -3'
miRNA:   3'- uaGCcCACG-GUUGCGGU--AGCuGCUAG- -5'
27575 3' -55.9 NC_005882.1 + 16333 0.67 0.452678
Target:  5'- -cCuGGUGCC-GCGCCAggaggCGACGuAUCu -3'
miRNA:   3'- uaGcCCACGGuUGCGGUa----GCUGC-UAG- -5'
27575 3' -55.9 NC_005882.1 + 26301 0.68 0.44659
Target:  5'- uUCuGGUaGUCGACGCCGgccuucuuguaggcgUCGAUGGUCg -3'
miRNA:   3'- uAGcCCA-CGGUUGCGGU---------------AGCUGCUAG- -5'
27575 3' -55.9 NC_005882.1 + 17651 0.68 0.44659
Target:  5'- -gCGGGccGCU-ACGCCGagcaaauggcgaacgUCGACGAUCg -3'
miRNA:   3'- uaGCCCa-CGGuUGCGGU---------------AGCUGCUAG- -5'
27575 3' -55.9 NC_005882.1 + 1596 0.68 0.432565
Target:  5'- -aUGGGcGUCGAC-CCGUgCGGCGAUCg -3'
miRNA:   3'- uaGCCCaCGGUUGcGGUA-GCUGCUAG- -5'
27575 3' -55.9 NC_005882.1 + 8251 0.68 0.422705
Target:  5'- -cUGGGUGgCGgcaaGCGCCGgUCGGCuGAUCa -3'
miRNA:   3'- uaGCCCACgGU----UGCGGU-AGCUG-CUAG- -5'
27575 3' -55.9 NC_005882.1 + 30734 0.68 0.412982
Target:  5'- ---uGGUGCCAGucgcguucacguUGCCGUCGACGuUCa -3'
miRNA:   3'- uagcCCACGGUU------------GCGGUAGCUGCuAG- -5'
27575 3' -55.9 NC_005882.1 + 19830 0.68 0.407214
Target:  5'- -aCGGGcGCCGACaCCGUCGAguacggcgagaacguCGAUCc -3'
miRNA:   3'- uaGCCCaCGGUUGcGGUAGCU---------------GCUAG- -5'
27575 3' -55.9 NC_005882.1 + 5324 0.68 0.403398
Target:  5'- uGUCGucGGUGCCgGGCGUCAuggUCGGCGAg- -3'
miRNA:   3'- -UAGC--CCACGG-UUGCGGU---AGCUGCUag -5'
27575 3' -55.9 NC_005882.1 + 21658 0.68 0.403398
Target:  5'- -cCGGGaGCgCGGCGCCuuccgGUCGACGggCa -3'
miRNA:   3'- uaGCCCaCG-GUUGCGG-----UAGCUGCuaG- -5'
27575 3' -55.9 NC_005882.1 + 1563 0.69 0.366504
Target:  5'- cAUCGGGcGUCGccGCGCagcUCGACGAUUa -3'
miRNA:   3'- -UAGCCCaCGGU--UGCGgu-AGCUGCUAG- -5'
27575 3' -55.9 NC_005882.1 + 32251 0.69 0.348949
Target:  5'- -aCGGGUGUCAGUGUCAUCc-CGAUCg -3'
miRNA:   3'- uaGCCCACGGUUGCGGUAGcuGCUAG- -5'
27575 3' -55.9 NC_005882.1 + 17775 0.7 0.340398
Target:  5'- cUCGGGcGCguGCgGCUGUCGAgGAUCg -3'
miRNA:   3'- uAGCCCaCGguUG-CGGUAGCUgCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.