miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27580 3' -56.9 NC_005882.1 + 30524 0.66 0.526846
Target:  5'- ----aUGCUGCGCGCgGCCgacaaGGUGACGg -3'
miRNA:   3'- ggcaaGCGACGCGUGgCGG-----UCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 32132 0.66 0.523609
Target:  5'- gCCGUacgugccugcgcgaUCGUUGUGuCGgCGCCGGCAu-- -3'
miRNA:   3'- -GGCA--------------AGCGACGC-GUgGCGGUCGUugu -5'
27580 3' -56.9 NC_005882.1 + 18641 0.66 0.520381
Target:  5'- gCCGaUCGCgcucUGCGCGCCuCCGgaccacccgaggcgcGCAACGa -3'
miRNA:   3'- -GGCaAGCG----ACGCGUGGcGGU---------------CGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 30628 0.66 0.516088
Target:  5'- aUCGggCgGCgaugGCGCugCGCUgacgGGCAACGu -3'
miRNA:   3'- -GGCaaG-CGa---CGCGugGCGG----UCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 28233 0.66 0.515017
Target:  5'- cCCGUUcaagcCGCcgGCcguacagcccaagGUGCCGCCGGCGGCc -3'
miRNA:   3'- -GGCAA-----GCGa-CG-------------CGUGGCGGUCGUUGu -5'
27580 3' -56.9 NC_005882.1 + 12721 0.66 0.50542
Target:  5'- aCGgcaUCGC-GCGCGCCGUCuGCGu-- -3'
miRNA:   3'- gGCa--AGCGaCGCGUGGCGGuCGUugu -5'
27580 3' -56.9 NC_005882.1 + 25474 0.66 0.50542
Target:  5'- ---cUCGC-GCGCAgcUCGUCGGCGACGc -3'
miRNA:   3'- ggcaAGCGaCGCGU--GGCGGUCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 5926 0.66 0.494847
Target:  5'- gCCGUUCGCacGgGCAUCGgcuaCCGGCuuCAg -3'
miRNA:   3'- -GGCAAGCGa-CgCGUGGC----GGUCGuuGU- -5'
27580 3' -56.9 NC_005882.1 + 30200 0.66 0.494847
Target:  5'- cCCGgcuUCGCgcGCGUACgGCUgaccgaccucGGCAACAu -3'
miRNA:   3'- -GGCa--AGCGa-CGCGUGgCGG----------UCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 17389 0.66 0.484376
Target:  5'- cUCGUagcccUUGCUGCGCAaguacucgaUCGCCuucuucGGCGGCAg -3'
miRNA:   3'- -GGCA-----AGCGACGCGU---------GGCGG------UCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 21826 0.66 0.484376
Target:  5'- cCCG---GCUGCGCgucaaGCUGCCAGCGc-- -3'
miRNA:   3'- -GGCaagCGACGCG-----UGGCGGUCGUugu -5'
27580 3' -56.9 NC_005882.1 + 12610 0.66 0.474013
Target:  5'- ----aCGCcgGUGCGCuUGCCGGCGACGc -3'
miRNA:   3'- ggcaaGCGa-CGCGUG-GCGGUCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 12329 0.66 0.474013
Target:  5'- gCGUgacgGCUGCcggcgGCGCCGaUCGGCAACGc -3'
miRNA:   3'- gGCAag--CGACG-----CGUGGC-GGUCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 3662 0.67 0.463762
Target:  5'- gCGUcgacgCGCUGCGCACuCGgcucacgaugaCCAGCAcGCGa -3'
miRNA:   3'- gGCAa----GCGACGCGUG-GC-----------GGUCGU-UGU- -5'
27580 3' -56.9 NC_005882.1 + 18228 0.67 0.453628
Target:  5'- aCCGaggacaacUUCGCcGCGCAagGCCGGCcGCGg -3'
miRNA:   3'- -GGC--------AAGCGaCGCGUggCGGUCGuUGU- -5'
27580 3' -56.9 NC_005882.1 + 3375 0.67 0.453628
Target:  5'- gCGggCGCUGCGCggccugggcuACCGCguGCuGGCc -3'
miRNA:   3'- gGCaaGCGACGCG----------UGGCGguCG-UUGu -5'
27580 3' -56.9 NC_005882.1 + 20730 0.67 0.453628
Target:  5'- aCGUUcCGCUGCaGCGCgGCgGcCAACAg -3'
miRNA:   3'- gGCAA-GCGACG-CGUGgCGgUcGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 3272 0.67 0.443615
Target:  5'- uCCGacgUGCUGCGCGagcgUGCgGGCGGCGu -3'
miRNA:   3'- -GGCaa-GCGACGCGUg---GCGgUCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 23543 0.67 0.443615
Target:  5'- cUCGggC-CUGCGCcuguggggcaACCGCaCGGCGGCAu -3'
miRNA:   3'- -GGCaaGcGACGCG----------UGGCG-GUCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 26562 0.67 0.443615
Target:  5'- aCGUgCGCcGCGCGgaGCUGGCGACc -3'
miRNA:   3'- gGCAaGCGaCGCGUggCGGUCGUUGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.