miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27580 3' -56.9 NC_005882.1 + 32747 0.71 0.258953
Target:  5'- aCGUUgGCUGCGUuCgCGCCGGCucgauGCGu -3'
miRNA:   3'- gGCAAgCGACGCGuG-GCGGUCGu----UGU- -5'
27580 3' -56.9 NC_005882.1 + 32202 0.73 0.187654
Target:  5'- gCCGggacUCGCacUGCGCgugcugACCGCCAGCGAa- -3'
miRNA:   3'- -GGCa---AGCG--ACGCG------UGGCGGUCGUUgu -5'
27580 3' -56.9 NC_005882.1 + 32132 0.66 0.523609
Target:  5'- gCCGUacgugccugcgcgaUCGUUGUGuCGgCGCCGGCAu-- -3'
miRNA:   3'- -GGCA--------------AGCGACGC-GUgGCGGUCGUugu -5'
27580 3' -56.9 NC_005882.1 + 31455 0.73 0.177601
Target:  5'- gUCGUcuUCGC-GgGCugCGCCGGCAGCc -3'
miRNA:   3'- -GGCA--AGCGaCgCGugGCGGUCGUUGu -5'
27580 3' -56.9 NC_005882.1 + 30628 0.66 0.516088
Target:  5'- aUCGggCgGCgaugGCGCugCGCUgacgGGCAACGu -3'
miRNA:   3'- -GGCaaG-CGa---CGCGugGCGG----UCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 30524 0.66 0.526846
Target:  5'- ----aUGCUGCGCGCgGCCgacaaGGUGACGg -3'
miRNA:   3'- ggcaaGCGACGCGUGgCGG-----UCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 30200 0.66 0.494847
Target:  5'- cCCGgcuUCGCgcGCGUACgGCUgaccgaccucGGCAACAu -3'
miRNA:   3'- -GGCa--AGCGa-CGCGUGgCGG----------UCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 28332 0.76 0.116388
Target:  5'- gCUGgagacCGcCUGCGCgGCCGCCGGCGGCAc -3'
miRNA:   3'- -GGCaa---GC-GACGCG-UGGCGGUCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 28233 0.66 0.515017
Target:  5'- cCCGUUcaagcCGCcgGCcguacagcccaagGUGCCGCCGGCGGCc -3'
miRNA:   3'- -GGCAA-----GCGa-CG-------------CGUGGCGGUCGUUGu -5'
27580 3' -56.9 NC_005882.1 + 27567 0.74 0.154537
Target:  5'- gUCGgcggUCGCcGCGCgcgcgGCCGCCGGCAugGc -3'
miRNA:   3'- -GGCa---AGCGaCGCG-----UGGCGGUCGUugU- -5'
27580 3' -56.9 NC_005882.1 + 27186 0.68 0.386294
Target:  5'- gCCGUUCacgaGCUgGC-CGCCcaggacgcggGCCAGCAGCAu -3'
miRNA:   3'- -GGCAAG----CGA-CGcGUGG----------CGGUCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 27025 0.68 0.414346
Target:  5'- gUCGUUgGCcGCGCGCUGCUcccuuucgGGCAggGCAu -3'
miRNA:   3'- -GGCAAgCGaCGCGUGGCGG--------UCGU--UGU- -5'
27580 3' -56.9 NC_005882.1 + 26562 0.67 0.443615
Target:  5'- aCGUgCGCcGCGCGgaGCUGGCGACc -3'
miRNA:   3'- gGCAaGCGaCGCGUggCGGUCGUUGu -5'
27580 3' -56.9 NC_005882.1 + 26344 0.68 0.404856
Target:  5'- uUCGUa-GCU-CGaauaGCCGCCGGCGACAa -3'
miRNA:   3'- -GGCAagCGAcGCg---UGGCGGUCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 25583 0.69 0.325893
Target:  5'- gCGcggCGCcGCGCugCGUgAGCAACGc -3'
miRNA:   3'- gGCaa-GCGaCGCGugGCGgUCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 25474 0.66 0.50542
Target:  5'- ---cUCGC-GCGCAgcUCGUCGGCGACGc -3'
miRNA:   3'- ggcaAGCGaCGCGU--GGCGGUCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 23632 0.7 0.279932
Target:  5'- aCGUcaucaacgaaUCGCUGCGCuACUucaGCCAGCAGu- -3'
miRNA:   3'- gGCA----------AGCGACGCG-UGG---CGGUCGUUgu -5'
27580 3' -56.9 NC_005882.1 + 23543 0.67 0.443615
Target:  5'- cUCGggC-CUGCGCcuguggggcaACCGCaCGGCGGCAu -3'
miRNA:   3'- -GGCaaGcGACGCG----------UGGCG-GUCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 21995 0.73 0.198205
Target:  5'- gCCG-UCGCgaucGUGCugCGCCAGCucAACGg -3'
miRNA:   3'- -GGCaAGCGa---CGCGugGCGGUCG--UUGU- -5'
27580 3' -56.9 NC_005882.1 + 21826 0.66 0.484376
Target:  5'- cCCG---GCUGCGCgucaaGCUGCCAGCGc-- -3'
miRNA:   3'- -GGCaagCGACGCG-----UGGCGGUCGUugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.