miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27595 3' -55.2 NC_005882.1 + 27895 0.66 0.590777
Target:  5'- uUGCGaACACGUcaGCUC-CUGUacGcGCGGCg -3'
miRNA:   3'- uAUGC-UGUGUA--CGAGcGACA--C-CGCCG- -5'
27595 3' -55.2 NC_005882.1 + 7696 0.66 0.568078
Target:  5'- --uCGAgGC--GCUCGCg--GGCGGCg -3'
miRNA:   3'- uauGCUgUGuaCGAGCGacaCCGCCG- -5'
27595 3' -55.2 NC_005882.1 + 25763 0.66 0.556808
Target:  5'- -cGCGAUgucgcgcagGCcgGCuUCGaagGUGGCGGCc -3'
miRNA:   3'- uaUGCUG---------UGuaCG-AGCga-CACCGCCG- -5'
27595 3' -55.2 NC_005882.1 + 4918 0.67 0.534472
Target:  5'- -cGCGcCGCu--CUCGCUGaucgaGGCGGCa -3'
miRNA:   3'- uaUGCuGUGuacGAGCGACa----CCGCCG- -5'
27595 3' -55.2 NC_005882.1 + 5384 0.67 0.534472
Target:  5'- -gACGGCGCcuugAUGagUUGCUG-GGCGGUa -3'
miRNA:   3'- uaUGCUGUG----UACg-AGCGACaCCGCCG- -5'
27595 3' -55.2 NC_005882.1 + 12048 0.67 0.523423
Target:  5'- -gACGGCACGUGCguugCGCgucagcucgGcGCGGUa -3'
miRNA:   3'- uaUGCUGUGUACGa---GCGaca------C-CGCCG- -5'
27595 3' -55.2 NC_005882.1 + 17807 0.67 0.512462
Target:  5'- -aACGGCugGggcugccggUGC-CGC-GUGGUGGCg -3'
miRNA:   3'- uaUGCUGugU---------ACGaGCGaCACCGCCG- -5'
27595 3' -55.2 NC_005882.1 + 29180 0.67 0.512462
Target:  5'- --cCGGCGCGccguUGCUCGC-GU-GCGGCc -3'
miRNA:   3'- uauGCUGUGU----ACGAGCGaCAcCGCCG- -5'
27595 3' -55.2 NC_005882.1 + 7256 0.67 0.512462
Target:  5'- uUGCGGCgaACAUGCgUCGUagUGUGGaaGCg -3'
miRNA:   3'- uAUGCUG--UGUACG-AGCG--ACACCgcCG- -5'
27595 3' -55.2 NC_005882.1 + 6643 0.67 0.505931
Target:  5'- cGUGCGGCgcgccgugcgucucgGCGUGCUgCGCcaagGUuucgaaGGCGGCa -3'
miRNA:   3'- -UAUGCUG---------------UGUACGA-GCGa---CA------CCGCCG- -5'
27595 3' -55.2 NC_005882.1 + 18284 0.67 0.501597
Target:  5'- -gACGAuuCACAUGCgCGUc--GGCGGCa -3'
miRNA:   3'- uaUGCU--GUGUACGaGCGacaCCGCCG- -5'
27595 3' -55.2 NC_005882.1 + 22368 0.67 0.490834
Target:  5'- -aGCGACGC-UGCUCGCgaugGGCuaccugaagccGGCc -3'
miRNA:   3'- uaUGCUGUGuACGAGCGaca-CCG-----------CCG- -5'
27595 3' -55.2 NC_005882.1 + 21195 0.67 0.490834
Target:  5'- --cCGGCGCuUGCUCGCcGacaucGGCGGUc -3'
miRNA:   3'- uauGCUGUGuACGAGCGaCa----CCGCCG- -5'
27595 3' -55.2 NC_005882.1 + 20393 0.67 0.475949
Target:  5'- -cGCGGCGCAacuggaucgcuucGgUCGCUGUcuggacGGCGGCu -3'
miRNA:   3'- uaUGCUGUGUa------------CgAGCGACA------CCGCCG- -5'
27595 3' -55.2 NC_005882.1 + 7199 0.68 0.469639
Target:  5'- cUACGACGCAUGUUCGCcgcaaUGUcGCGu- -3'
miRNA:   3'- uAUGCUGUGUACGAGCG-----ACAcCGCcg -5'
27595 3' -55.2 NC_005882.1 + 27600 0.68 0.469639
Target:  5'- -gGCGACGCAgGC-CGCgGccGCGGCg -3'
miRNA:   3'- uaUGCUGUGUaCGaGCGaCacCGCCG- -5'
27595 3' -55.2 NC_005882.1 + 32137 0.68 0.448921
Target:  5'- cUGCGGCcguACGUGCcugcgcgaUCGUUGUGuCGGCg -3'
miRNA:   3'- uAUGCUG---UGUACG--------AGCGACACcGCCG- -5'
27595 3' -55.2 NC_005882.1 + 24409 0.68 0.432717
Target:  5'- -gGCGGCgaagACAUGCUgGCUGacuuccgcgccaacaUcGGCGGCu -3'
miRNA:   3'- uaUGCUG----UGUACGAgCGAC---------------A-CCGCCG- -5'
27595 3' -55.2 NC_005882.1 + 19854 0.68 0.428719
Target:  5'- --cCGGCGC--GCUCGCgcGUGGCGuGCu -3'
miRNA:   3'- uauGCUGUGuaCGAGCGa-CACCGC-CG- -5'
27595 3' -55.2 NC_005882.1 + 29331 0.69 0.409063
Target:  5'- -gGCGACGaucgcgGCUCGC-GUGGCGaaGCg -3'
miRNA:   3'- uaUGCUGUgua---CGAGCGaCACCGC--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.