Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27595 | 5' | -61.1 | NC_005882.1 | + | 6818 | 0.66 | 0.320674 |
Target: 5'- gUCGaUCUUcGCGUUCuugucggacagcagACGCGUUUGCGCGg -3' miRNA: 3'- -GGC-GGAA-CGCGAG--------------UGCGCGGACGCGC- -5' |
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27595 | 5' | -61.1 | NC_005882.1 | + | 7692 | 0.67 | 0.265034 |
Target: 5'- gCUGUCgagGCGCUCGCGgGCg-GCGuCGa -3' miRNA: 3'- -GGCGGaa-CGCGAGUGCgCGgaCGC-GC- -5' |
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27595 | 5' | -61.1 | NC_005882.1 | + | 14182 | 0.67 | 0.271794 |
Target: 5'- uCCGCCUggagGUGCaggCACGCGCggaaGCGg -3' miRNA: 3'- -GGCGGAa---CGCGa--GUGCGCGgacgCGC- -5' |
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27595 | 5' | -61.1 | NC_005882.1 | + | 9198 | 0.67 | 0.278691 |
Target: 5'- gCGCCauUUGgGUaaucguauggauUCAauaggcgaGCGCCUGCGCGa -3' miRNA: 3'- gGCGG--AACgCG------------AGUg-------CGCGGACGCGC- -5' |
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27595 | 5' | -61.1 | NC_005882.1 | + | 23202 | 0.67 | 0.278691 |
Target: 5'- gCGCCgaucgGCacgacGCUCGCGCaggcgcugGCCggGCGCGg -3' miRNA: 3'- gGCGGaa---CG-----CGAGUGCG--------CGGa-CGCGC- -5' |
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27595 | 5' | -61.1 | NC_005882.1 | + | 6401 | 0.67 | 0.285728 |
Target: 5'- -gGCCggcCGCgCGCGCuGCCUGgGCGa -3' miRNA: 3'- ggCGGaacGCGaGUGCG-CGGACgCGC- -5' |
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27595 | 5' | -61.1 | NC_005882.1 | + | 25573 | 0.67 | 0.285728 |
Target: 5'- cCCGgCUgGCGCgcggCGC-CGCgCUGCGUGa -3' miRNA: 3'- -GGCgGAaCGCGa---GUGcGCG-GACGCGC- -5' |
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27595 | 5' | -61.1 | NC_005882.1 | + | 2115 | 0.66 | 0.307675 |
Target: 5'- gCCuuCCUUGuCGgUCGCaaaCGCCUGCGUGa -3' miRNA: 3'- -GGc-GGAAC-GCgAGUGc--GCGGACGCGC- -5' |
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27595 | 5' | -61.1 | NC_005882.1 | + | 7858 | 0.66 | 0.315272 |
Target: 5'- gUCGCCUUGgugaGUUCGCcggGCGUCaggccaUGCGCGa -3' miRNA: 3'- -GGCGGAACg---CGAGUG---CGCGG------ACGCGC- -5' |
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27595 | 5' | -61.1 | NC_005882.1 | + | 627 | 0.67 | 0.256451 |
Target: 5'- uUCGCCUggucgGCGCcgaugucggccagcUCGaucaGUGCCUGgGCGa -3' miRNA: 3'- -GGCGGAa----CGCG--------------AGUg---CGCGGACgCGC- -5' |
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27595 | 5' | -61.1 | NC_005882.1 | + | 18130 | 0.68 | 0.239352 |
Target: 5'- aCGaCUcgGCGCUgcgCACGCGCUUGCuGCa -3' miRNA: 3'- gGC-GGaaCGCGA---GUGCGCGGACG-CGc -5' |
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27595 | 5' | -61.1 | NC_005882.1 | + | 13660 | 0.68 | 0.233266 |
Target: 5'- gCCGCUggugggGCGauCUCACGCGCUacgGCGuCGa -3' miRNA: 3'- -GGCGGaa----CGC--GAGUGCGCGGa--CGC-GC- -5' |
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27595 | 5' | -61.1 | NC_005882.1 | + | 19208 | 0.73 | 0.097987 |
Target: 5'- gCCGCCg-GCcCUCAaGgGCCUGCGCGa -3' miRNA: 3'- -GGCGGaaCGcGAGUgCgCGGACGCGC- -5' |
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27595 | 5' | -61.1 | NC_005882.1 | + | 15584 | 0.73 | 0.103635 |
Target: 5'- aUGCCgacGUGCUCGCG-GaCCUGCGCGc -3' miRNA: 3'- gGCGGaa-CGCGAGUGCgC-GGACGCGC- -5' |
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27595 | 5' | -61.1 | NC_005882.1 | + | 18640 | 0.72 | 0.111748 |
Target: 5'- -aGCCgaucGCGCUCuGCGCGCCUccggaccacccgagGCGCGc -3' miRNA: 3'- ggCGGaa--CGCGAG-UGCGCGGA--------------CGCGC- -5' |
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27595 | 5' | -61.1 | NC_005882.1 | + | 19548 | 0.72 | 0.119123 |
Target: 5'- cUCGCCgacGCGCagGCGCGUgaGCGCa -3' miRNA: 3'- -GGCGGaa-CGCGagUGCGCGgaCGCGc -5' |
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27595 | 5' | -61.1 | NC_005882.1 | + | 11960 | 0.71 | 0.144442 |
Target: 5'- cCCGCCgagGCGCUgGCuaccGCGCCgagcugacGCGCa -3' miRNA: 3'- -GGCGGaa-CGCGAgUG----CGCGGa-------CGCGc -5' |
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27595 | 5' | -61.1 | NC_005882.1 | + | 25444 | 0.71 | 0.148438 |
Target: 5'- cCCGCCUggggGaCGCgauggCGCGgGCCguUGCGCa -3' miRNA: 3'- -GGCGGAa---C-GCGa----GUGCgCGG--ACGCGc -5' |
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27595 | 5' | -61.1 | NC_005882.1 | + | 18982 | 0.69 | 0.215784 |
Target: 5'- uCgGCCauccGCGCgacaACGCGCCgGCGUGg -3' miRNA: 3'- -GgCGGaa--CGCGag--UGCGCGGaCGCGC- -5' |
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27595 | 5' | -61.1 | NC_005882.1 | + | 6651 | 0.68 | 0.227309 |
Target: 5'- gCGCCgUGCGuCUCgGCGUGC-UGCGCc -3' miRNA: 3'- gGCGGaACGC-GAG-UGCGCGgACGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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