miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27595 5' -61.1 NC_005882.1 + 19618 1.09 0.000159
Target:  5'- gCCGCCUUGCGCUCACGCGCCUGCGCGu -3'
miRNA:   3'- -GGCGGAACGCGAGUGCGCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 28121 0.79 0.034948
Target:  5'- aUCGCCUguuuUGCGCUCAC-CGCC-GCGCGc -3'
miRNA:   3'- -GGCGGA----ACGCGAGUGcGCGGaCGCGC- -5'
27595 5' -61.1 NC_005882.1 + 23290 0.78 0.042809
Target:  5'- cCCGCCggcccGCGCcCGgccaGCGCCUGCGCGa -3'
miRNA:   3'- -GGCGGaa---CGCGaGUg---CGCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 19857 0.76 0.062237
Target:  5'- aCGCCggcGCGCUCGCGCGUg-GCGUGc -3'
miRNA:   3'- gGCGGaa-CGCGAGUGCGCGgaCGCGC- -5'
27595 5' -61.1 NC_005882.1 + 16071 0.76 0.0659
Target:  5'- gCCGCCUUGCgGCggcgCACGCacccGCCgacgUGCGCGu -3'
miRNA:   3'- -GGCGGAACG-CGa---GUGCG----CGG----ACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 10956 0.75 0.067809
Target:  5'- uCCGCa-UGCGCcCGCGCGCgCUGCGaCGa -3'
miRNA:   3'- -GGCGgaACGCGaGUGCGCG-GACGC-GC- -5'
27595 5' -61.1 NC_005882.1 + 17176 0.74 0.0802
Target:  5'- uCCGCUUUaaaagcgGCGCgaccaGCGCCUGCGCGu -3'
miRNA:   3'- -GGCGGAA-------CGCGagug-CGCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 28346 0.74 0.082739
Target:  5'- aCCGCCgaugUGaCGCUgGagacCGCCUGCGCGg -3'
miRNA:   3'- -GGCGGa---AC-GCGAgUgc--GCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 18294 0.74 0.083918
Target:  5'- gCCgGCCUUGCGCggcgaaguuguccUCGgugaccagcaccaGCGCCUGCGCGa -3'
miRNA:   3'- -GG-CGGAACGCG-------------AGUg------------CGCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 19798 0.74 0.087551
Target:  5'- aCGCCacGCGCgaGCGCGCCgGCGUGa -3'
miRNA:   3'- gGCGGaaCGCGagUGCGCGGaCGCGC- -5'
27595 5' -61.1 NC_005882.1 + 21157 0.74 0.09263
Target:  5'- aCGCCgaGCGCcuUCGCGcCGgCUGCGCa -3'
miRNA:   3'- gGCGGaaCGCG--AGUGC-GCgGACGCGc -5'
27595 5' -61.1 NC_005882.1 + 19208 0.73 0.097987
Target:  5'- gCCGCCg-GCcCUCAaGgGCCUGCGCGa -3'
miRNA:   3'- -GGCGGaaCGcGAGUgCgCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 15584 0.73 0.103635
Target:  5'- aUGCCgacGUGCUCGCG-GaCCUGCGCGc -3'
miRNA:   3'- gGCGGaa-CGCGAGUGCgC-GGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 26262 0.73 0.109589
Target:  5'- gUCGCCUUcGCGUUCAUGUGCgacagccagUUGCGCa -3'
miRNA:   3'- -GGCGGAA-CGCGAGUGCGCG---------GACGCGc -5'
27595 5' -61.1 NC_005882.1 + 18640 0.72 0.111748
Target:  5'- -aGCCgaucGCGCUCuGCGCGCCUccggaccacccgagGCGCGc -3'
miRNA:   3'- ggCGGaa--CGCGAG-UGCGCGGA--------------CGCGC- -5'
27595 5' -61.1 NC_005882.1 + 19548 0.72 0.119123
Target:  5'- cUCGCCgacGCGCagGCGCGUgaGCGCa -3'
miRNA:   3'- -GGCGGaa-CGCGagUGCGCGgaCGCGc -5'
27595 5' -61.1 NC_005882.1 + 32142 0.72 0.129425
Target:  5'- -gGCUUcUGCgGCcgUACGUGCCUGCGCGa -3'
miRNA:   3'- ggCGGA-ACG-CGa-GUGCGCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 11960 0.71 0.144442
Target:  5'- cCCGCCgagGCGCUgGCuaccGCGCCgagcugacGCGCa -3'
miRNA:   3'- -GGCGGaa-CGCGAgUG----CGCGGa-------CGCGc -5'
27595 5' -61.1 NC_005882.1 + 16808 0.71 0.147631
Target:  5'- aCCGCCUUGuCGCcgucgcgaugucgUC-CGUcaccucaagcccgGCCUGCGCGg -3'
miRNA:   3'- -GGCGGAAC-GCG-------------AGuGCG-------------CGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 25444 0.71 0.148438
Target:  5'- cCCGCCUggggGaCGCgauggCGCGgGCCguUGCGCa -3'
miRNA:   3'- -GGCGGAa---C-GCGa----GUGCgCGG--ACGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.