miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27595 5' -61.1 NC_005882.1 + 627 0.67 0.256451
Target:  5'- uUCGCCUggucgGCGCcgaugucggccagcUCGaucaGUGCCUGgGCGa -3'
miRNA:   3'- -GGCGGAa----CGCG--------------AGUg---CGCGGACgCGC- -5'
27595 5' -61.1 NC_005882.1 + 2115 0.66 0.307675
Target:  5'- gCCuuCCUUGuCGgUCGCaaaCGCCUGCGUGa -3'
miRNA:   3'- -GGc-GGAAC-GCgAGUGc--GCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 3324 0.66 0.32301
Target:  5'- gCCGCgcaGCGCcCGCGCGCaaGCGUu -3'
miRNA:   3'- -GGCGgaaCGCGaGUGCGCGgaCGCGc -5'
27595 5' -61.1 NC_005882.1 + 3409 0.71 0.152534
Target:  5'- gCGUCUcGCGuCUCACGUugcugaacGCUUGCGCGc -3'
miRNA:   3'- gGCGGAaCGC-GAGUGCG--------CGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 3558 0.66 0.330888
Target:  5'- gCCGCgaUGaaucuCGC-CGCGgGCCUGgGCGu -3'
miRNA:   3'- -GGCGgaAC-----GCGaGUGCgCGGACgCGC- -5'
27595 5' -61.1 NC_005882.1 + 4946 0.66 0.32301
Target:  5'- aCGaCCUcguUGCGC-CGCGCGUCgaacucGCGCc -3'
miRNA:   3'- gGC-GGA---ACGCGaGUGCGCGGa-----CGCGc -5'
27595 5' -61.1 NC_005882.1 + 5977 0.68 0.221483
Target:  5'- aUGCCcgUGCGa--ACG-GCCUGCGCGu -3'
miRNA:   3'- gGCGGa-ACGCgagUGCgCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 6401 0.67 0.285728
Target:  5'- -gGCCggcCGCgCGCGCuGCCUGgGCGa -3'
miRNA:   3'- ggCGGaacGCGaGUGCG-CGGACgCGC- -5'
27595 5' -61.1 NC_005882.1 + 6651 0.68 0.227309
Target:  5'- gCGCCgUGCGuCUCgGCGUGC-UGCGCc -3'
miRNA:   3'- gGCGGaACGC-GAG-UGCGCGgACGCGc -5'
27595 5' -61.1 NC_005882.1 + 6818 0.66 0.320674
Target:  5'- gUCGaUCUUcGCGUUCuugucggacagcagACGCGUUUGCGCGg -3'
miRNA:   3'- -GGC-GGAA-CGCGAG--------------UGCGCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 6900 0.68 0.250004
Target:  5'- gCCGCC--GCGCaaACGCGUCUGCuguccgacaagaacGCGa -3'
miRNA:   3'- -GGCGGaaCGCGagUGCGCGGACG--------------CGC- -5'
27595 5' -61.1 NC_005882.1 + 7692 0.67 0.265034
Target:  5'- gCUGUCgagGCGCUCGCGgGCg-GCGuCGa -3'
miRNA:   3'- -GGCGGaa-CGCGAGUGCgCGgaCGC-GC- -5'
27595 5' -61.1 NC_005882.1 + 7858 0.66 0.315272
Target:  5'- gUCGCCUUGgugaGUUCGCcggGCGUCaggccaUGCGCGa -3'
miRNA:   3'- -GGCGGAACg---CGAGUG---CGCGG------ACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 9198 0.67 0.278691
Target:  5'- gCGCCauUUGgGUaaucguauggauUCAauaggcgaGCGCCUGCGCGa -3'
miRNA:   3'- gGCGG--AACgCG------------AGUg-------CGCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 9314 0.68 0.245571
Target:  5'- gCCGUCUgGCuauaccccaaccGCUCACGCuCCUcGCGCa -3'
miRNA:   3'- -GGCGGAaCG------------CGAGUGCGcGGA-CGCGc -5'
27595 5' -61.1 NC_005882.1 + 9564 0.66 0.338907
Target:  5'- gCGCgUcGUGCUUGCGgcCGCCaGCGCGc -3'
miRNA:   3'- gGCGgAaCGCGAGUGC--GCGGaCGCGC- -5'
27595 5' -61.1 NC_005882.1 + 10956 0.75 0.067809
Target:  5'- uCCGCa-UGCGCcCGCGCGCgCUGCGaCGa -3'
miRNA:   3'- -GGCGgaACGCGaGUGCGCG-GACGC-GC- -5'
27595 5' -61.1 NC_005882.1 + 11960 0.71 0.144442
Target:  5'- cCCGCCgagGCGCUgGCuaccGCGCCgagcugacGCGCa -3'
miRNA:   3'- -GGCGGaa-CGCGAgUG----CGCGGa-------CGCGc -5'
27595 5' -61.1 NC_005882.1 + 12007 0.67 0.258411
Target:  5'- gCGCCUcgGCGggcaCUUGCGCgGCCacggGCGCGg -3'
miRNA:   3'- gGCGGAa-CGC----GAGUGCG-CGGa---CGCGC- -5'
27595 5' -61.1 NC_005882.1 + 12128 0.67 0.258411
Target:  5'- aCGCUgacgGCGUcCGCGCGCCaGCGg- -3'
miRNA:   3'- gGCGGaa--CGCGaGUGCGCGGaCGCgc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.