miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27595 5' -61.1 NC_005882.1 + 6818 0.66 0.320674
Target:  5'- gUCGaUCUUcGCGUUCuugucggacagcagACGCGUUUGCGCGg -3'
miRNA:   3'- -GGC-GGAA-CGCGAG--------------UGCGCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 7692 0.67 0.265034
Target:  5'- gCUGUCgagGCGCUCGCGgGCg-GCGuCGa -3'
miRNA:   3'- -GGCGGaa-CGCGAGUGCgCGgaCGC-GC- -5'
27595 5' -61.1 NC_005882.1 + 14182 0.67 0.271794
Target:  5'- uCCGCCUggagGUGCaggCACGCGCggaaGCGg -3'
miRNA:   3'- -GGCGGAa---CGCGa--GUGCGCGgacgCGC- -5'
27595 5' -61.1 NC_005882.1 + 9198 0.67 0.278691
Target:  5'- gCGCCauUUGgGUaaucguauggauUCAauaggcgaGCGCCUGCGCGa -3'
miRNA:   3'- gGCGG--AACgCG------------AGUg-------CGCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 23202 0.67 0.278691
Target:  5'- gCGCCgaucgGCacgacGCUCGCGCaggcgcugGCCggGCGCGg -3'
miRNA:   3'- gGCGGaa---CG-----CGAGUGCG--------CGGa-CGCGC- -5'
27595 5' -61.1 NC_005882.1 + 6401 0.67 0.285728
Target:  5'- -gGCCggcCGCgCGCGCuGCCUGgGCGa -3'
miRNA:   3'- ggCGGaacGCGaGUGCG-CGGACgCGC- -5'
27595 5' -61.1 NC_005882.1 + 25573 0.67 0.285728
Target:  5'- cCCGgCUgGCGCgcggCGC-CGCgCUGCGUGa -3'
miRNA:   3'- -GGCgGAaCGCGa---GUGcGCG-GACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 2115 0.66 0.307675
Target:  5'- gCCuuCCUUGuCGgUCGCaaaCGCCUGCGUGa -3'
miRNA:   3'- -GGc-GGAAC-GCgAGUGc--GCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 7858 0.66 0.315272
Target:  5'- gUCGCCUUGgugaGUUCGCcggGCGUCaggccaUGCGCGa -3'
miRNA:   3'- -GGCGGAACg---CGAGUG---CGCGG------ACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 627 0.67 0.256451
Target:  5'- uUCGCCUggucgGCGCcgaugucggccagcUCGaucaGUGCCUGgGCGa -3'
miRNA:   3'- -GGCGGAa----CGCG--------------AGUg---CGCGGACgCGC- -5'
27595 5' -61.1 NC_005882.1 + 18130 0.68 0.239352
Target:  5'- aCGaCUcgGCGCUgcgCACGCGCUUGCuGCa -3'
miRNA:   3'- gGC-GGaaCGCGA---GUGCGCGGACG-CGc -5'
27595 5' -61.1 NC_005882.1 + 13660 0.68 0.233266
Target:  5'- gCCGCUggugggGCGauCUCACGCGCUacgGCGuCGa -3'
miRNA:   3'- -GGCGGaa----CGC--GAGUGCGCGGa--CGC-GC- -5'
27595 5' -61.1 NC_005882.1 + 19208 0.73 0.097987
Target:  5'- gCCGCCg-GCcCUCAaGgGCCUGCGCGa -3'
miRNA:   3'- -GGCGGaaCGcGAGUgCgCGGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 15584 0.73 0.103635
Target:  5'- aUGCCgacGUGCUCGCG-GaCCUGCGCGc -3'
miRNA:   3'- gGCGGaa-CGCGAGUGCgC-GGACGCGC- -5'
27595 5' -61.1 NC_005882.1 + 18640 0.72 0.111748
Target:  5'- -aGCCgaucGCGCUCuGCGCGCCUccggaccacccgagGCGCGc -3'
miRNA:   3'- ggCGGaa--CGCGAG-UGCGCGGA--------------CGCGC- -5'
27595 5' -61.1 NC_005882.1 + 19548 0.72 0.119123
Target:  5'- cUCGCCgacGCGCagGCGCGUgaGCGCa -3'
miRNA:   3'- -GGCGGaa-CGCGagUGCGCGgaCGCGc -5'
27595 5' -61.1 NC_005882.1 + 11960 0.71 0.144442
Target:  5'- cCCGCCgagGCGCUgGCuaccGCGCCgagcugacGCGCa -3'
miRNA:   3'- -GGCGGaa-CGCGAgUG----CGCGGa-------CGCGc -5'
27595 5' -61.1 NC_005882.1 + 25444 0.71 0.148438
Target:  5'- cCCGCCUggggGaCGCgauggCGCGgGCCguUGCGCa -3'
miRNA:   3'- -GGCGGAa---C-GCGa----GUGCgCGG--ACGCGc -5'
27595 5' -61.1 NC_005882.1 + 18982 0.69 0.215784
Target:  5'- uCgGCCauccGCGCgacaACGCGCCgGCGUGg -3'
miRNA:   3'- -GgCGGaa--CGCGag--UGCGCGGaCGCGC- -5'
27595 5' -61.1 NC_005882.1 + 6651 0.68 0.227309
Target:  5'- gCGCCgUGCGuCUCgGCGUGC-UGCGCc -3'
miRNA:   3'- gGCGGaACGC-GAG-UGCGCGgACGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.