miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27632 3' -52.9 NC_005882.1 + 17105 0.66 0.764878
Target:  5'- aCGCGcAGGCGCUgGUCGcgCcgCu-- -3'
miRNA:   3'- -GCGCuUCCGUGAgCAGCuaGuaGcug -5'
27632 3' -52.9 NC_005882.1 + 31027 0.66 0.764878
Target:  5'- uGCGGcguGGCGCg-GUCGAUCggcauGUCGAg -3'
miRNA:   3'- gCGCUu--CCGUGagCAGCUAG-----UAGCUg -5'
27632 3' -52.9 NC_005882.1 + 16072 0.66 0.764878
Target:  5'- gGCGAAGaGUcgugucGCgaaGUCGAUCGcCGACg -3'
miRNA:   3'- gCGCUUC-CG------UGag-CAGCUAGUaGCUG- -5'
27632 3' -52.9 NC_005882.1 + 29273 0.66 0.764878
Target:  5'- uCGuCGAAGcCAauCUCGUCGAUC-UCGAa -3'
miRNA:   3'- -GC-GCUUCcGU--GAGCAGCUAGuAGCUg -5'
27632 3' -52.9 NC_005882.1 + 13613 0.66 0.764878
Target:  5'- gGCGAAGaucgaGCGCaUCGUCaucugGAUCAcguccUCGACg -3'
miRNA:   3'- gCGCUUC-----CGUG-AGCAG-----CUAGU-----AGCUG- -5'
27632 3' -52.9 NC_005882.1 + 14766 0.66 0.762758
Target:  5'- cCGCGAuGGCGCUgcugaugUGgggCGGUCAgguucacaucauuUCGACg -3'
miRNA:   3'- -GCGCUuCCGUGA-------GCa--GCUAGU-------------AGCUG- -5'
27632 3' -52.9 NC_005882.1 + 8248 0.66 0.754222
Target:  5'- gGUGgcGGCAagcgccggUCGgcuGAUCAUCGACa -3'
miRNA:   3'- gCGCuuCCGUg-------AGCag-CUAGUAGCUG- -5'
27632 3' -52.9 NC_005882.1 + 2265 0.66 0.754222
Target:  5'- aCGCuugcAGGcCGCgaaGUCGAUgAUCGACg -3'
miRNA:   3'- -GCGcu--UCC-GUGag-CAGCUAgUAGCUG- -5'
27632 3' -52.9 NC_005882.1 + 1182 0.66 0.754222
Target:  5'- cCGCuucGAAGGaaaAUUCGUCGuauUCAaCGACg -3'
miRNA:   3'- -GCG---CUUCCg--UGAGCAGCu--AGUaGCUG- -5'
27632 3' -52.9 NC_005882.1 + 26149 0.66 0.754222
Target:  5'- cCGCGAAGGCGC-CGgcaguggCGAcgaagCcgUGACg -3'
miRNA:   3'- -GCGCUUCCGUGaGCa------GCUa----GuaGCUG- -5'
27632 3' -52.9 NC_005882.1 + 3242 0.66 0.754222
Target:  5'- uCGCG-AGGUACgggcCGaUCugGAUCGUCGGCc -3'
miRNA:   3'- -GCGCuUCCGUGa---GC-AG--CUAGUAGCUG- -5'
27632 3' -52.9 NC_005882.1 + 23162 0.66 0.754222
Target:  5'- gGCGAuGGCcguccaGCUCGgggCGAUCGcguacaUCGAUg -3'
miRNA:   3'- gCGCUuCCG------UGAGCa--GCUAGU------AGCUG- -5'
27632 3' -52.9 NC_005882.1 + 5235 0.66 0.754222
Target:  5'- gGCGAggacGGGCGCgagacguacuUCGUCGuuccgcUCAUCGuACg -3'
miRNA:   3'- gCGCU----UCCGUG----------AGCAGCu-----AGUAGC-UG- -5'
27632 3' -52.9 NC_005882.1 + 6794 0.66 0.743432
Target:  5'- gCGCGucuucuucgcGGCcaGCUCGUCGAUCuUCG-Cg -3'
miRNA:   3'- -GCGCuu--------CCG--UGAGCAGCUAGuAGCuG- -5'
27632 3' -52.9 NC_005882.1 + 36025 0.66 0.7215
Target:  5'- gGCGuaucGGCAUUCG-CGAUCGcUCGcACa -3'
miRNA:   3'- gCGCuu--CCGUGAGCaGCUAGU-AGC-UG- -5'
27632 3' -52.9 NC_005882.1 + 24036 0.67 0.703674
Target:  5'- gGCGAucauggccgagcacaAGGCGCUCGgc-AUgAUCGGCa -3'
miRNA:   3'- gCGCU---------------UCCGUGAGCagcUAgUAGCUG- -5'
27632 3' -52.9 NC_005882.1 + 27873 0.67 0.687916
Target:  5'- aCGCGc-GGCGCUCG-CGcuucgcgagcagGUCGUCGAg -3'
miRNA:   3'- -GCGCuuCCGUGAGCaGC------------UAGUAGCUg -5'
27632 3' -52.9 NC_005882.1 + 32869 0.67 0.665216
Target:  5'- aGUGGGcGGCGC-CGUUGuagcgCAUCGGCa -3'
miRNA:   3'- gCGCUU-CCGUGaGCAGCua---GUAGCUG- -5'
27632 3' -52.9 NC_005882.1 + 12724 0.67 0.665216
Target:  5'- gCGCGgcGGCGCUCGcCGg----CGACc -3'
miRNA:   3'- -GCGCuuCCGUGAGCaGCuaguaGCUG- -5'
27632 3' -52.9 NC_005882.1 + 18205 0.67 0.665216
Target:  5'- uCGCGcAGGCGCUgGUgcUGGUCAcCGAg -3'
miRNA:   3'- -GCGCuUCCGUGAgCA--GCUAGUaGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.