miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27632 5' -49.5 NC_005882.1 + 2219 1.14 0.001119
Target:  5'- cCUGCAAGCGUUCAUCGAACGCGAUGCg -3'
miRNA:   3'- -GACGUUCGCAAGUAGCUUGCGCUACG- -5'
27632 5' -49.5 NC_005882.1 + 3341 0.76 0.351793
Target:  5'- -cGCAAGCGUUCAgcaaCGugaGACGCGAgacGCa -3'
miRNA:   3'- gaCGUUCGCAAGUa---GC---UUGCGCUa--CG- -5'
27632 5' -49.5 NC_005882.1 + 3670 0.75 0.428909
Target:  5'- -cGCAAGCGg-CGUCGA-CGCGcUGCg -3'
miRNA:   3'- gaCGUUCGCaaGUAGCUuGCGCuACG- -5'
27632 5' -49.5 NC_005882.1 + 9331 0.75 0.43923
Target:  5'- -gGCGAGCGUUCGcCGGACGCca-GCu -3'
miRNA:   3'- gaCGUUCGCAAGUaGCUUGCGcuaCG- -5'
27632 5' -49.5 NC_005882.1 + 23261 0.73 0.542385
Target:  5'- -cGCGAGCGUcgugccgaucggcgCAUCGAuguACGCGAUcGCc -3'
miRNA:   3'- gaCGUUCGCAa-------------GUAGCU---UGCGCUA-CG- -5'
27632 5' -49.5 NC_005882.1 + 19417 0.71 0.642892
Target:  5'- aUGCGccgaccAGCGcaUUCGcCGAACGCGggGCg -3'
miRNA:   3'- gACGU------UCGC--AAGUaGCUUGCGCuaCG- -5'
27632 5' -49.5 NC_005882.1 + 22696 0.71 0.642892
Target:  5'- aCUGCGccGCGUcgaCGUCGGACaGCGAcUGCa -3'
miRNA:   3'- -GACGUu-CGCAa--GUAGCUUG-CGCU-ACG- -5'
27632 5' -49.5 NC_005882.1 + 23385 0.71 0.654665
Target:  5'- gCUcCAGGCGUUCcgCGuugguCGCGGUGUc -3'
miRNA:   3'- -GAcGUUCGCAAGuaGCuu---GCGCUACG- -5'
27632 5' -49.5 NC_005882.1 + 19695 0.7 0.678128
Target:  5'- -cGUGAGcCGUUCGaguucggCGAAgGCGAUGCc -3'
miRNA:   3'- gaCGUUC-GCAAGUa------GCUUgCGCUACG- -5'
27632 5' -49.5 NC_005882.1 + 14953 0.7 0.678128
Target:  5'- cCUGgAcuGCG-UCggCGAACGUGAUGCg -3'
miRNA:   3'- -GACgUu-CGCaAGuaGCUUGCGCUACG- -5'
27632 5' -49.5 NC_005882.1 + 1442 0.7 0.688627
Target:  5'- uCUGCGAGCugGUUCgauucugGUCuGAGgGUGAUGCa -3'
miRNA:   3'- -GACGUUCG--CAAG-------UAG-CUUgCGCUACG- -5'
27632 5' -49.5 NC_005882.1 + 33105 0.7 0.68979
Target:  5'- aCUGCGAauGCGg--GUCGGGCGCGGcgauaUGCu -3'
miRNA:   3'- -GACGUU--CGCaagUAGCUUGCGCU-----ACG- -5'
27632 5' -49.5 NC_005882.1 + 10120 0.7 0.68979
Target:  5'- -aGCGGGCGUagAUUGGGCGgcgcuUGGUGCg -3'
miRNA:   3'- gaCGUUCGCAagUAGCUUGC-----GCUACG- -5'
27632 5' -49.5 NC_005882.1 + 23224 0.7 0.724342
Target:  5'- -cGCAGGCGcUgGcCGGGCGCGGgccgGCg -3'
miRNA:   3'- gaCGUUCGCaAgUaGCUUGCGCUa---CG- -5'
27632 5' -49.5 NC_005882.1 + 29386 0.69 0.735668
Target:  5'- -cGCGAGCcgcgaUCGUCGccAGCGUGGUGUg -3'
miRNA:   3'- gaCGUUCGca---AGUAGC--UUGCGCUACG- -5'
27632 5' -49.5 NC_005882.1 + 27553 0.69 0.779635
Target:  5'- -gGCAucgGGCGcUCGUCGGcggucgccgcGCGCGcgGCc -3'
miRNA:   3'- gaCGU---UCGCaAGUAGCU----------UGCGCuaCG- -5'
27632 5' -49.5 NC_005882.1 + 2282 0.69 0.779635
Target:  5'- -cGCAucGCGUUCGaUGAACGCu-UGCa -3'
miRNA:   3'- gaCGUu-CGCAAGUaGCUUGCGcuACG- -5'
27632 5' -49.5 NC_005882.1 + 13452 0.68 0.810821
Target:  5'- uUGUAAGUuUUCGaaUCuGAGCGCGAUcGCg -3'
miRNA:   3'- gACGUUCGcAAGU--AG-CUUGCGCUA-CG- -5'
27632 5' -49.5 NC_005882.1 + 35961 0.68 0.810821
Target:  5'- gUGCGAGCGaUCG-CGAAUGcCGAUacGCc -3'
miRNA:   3'- gACGUUCGCaAGUaGCUUGC-GCUA--CG- -5'
27632 5' -49.5 NC_005882.1 + 34482 0.68 0.820803
Target:  5'- -aGCGGGcCGUcggcucggUCGUCGGAU-CGAUGCg -3'
miRNA:   3'- gaCGUUC-GCA--------AGUAGCUUGcGCUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.