Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27632 | 5' | -49.5 | NC_005882.1 | + | 6038 | 0.66 | 0.899126 |
Target: 5'- gUGCGAGCaGUUgGUCGGgauggACGCcauacAUGCg -3' miRNA: 3'- gACGUUCG-CAAgUAGCU-----UGCGc----UACG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 5742 | 0.67 | 0.840074 |
Target: 5'- cCUGCAuAGCGUUgAU-GAGCGuCGA-GCa -3' miRNA: 3'- -GACGU-UCGCAAgUAgCUUGC-GCUaCG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 18554 | 0.67 | 0.858342 |
Target: 5'- gCUGCAaccugaAGCG---GUCGAGC-CGGUGCu -3' miRNA: 3'- -GACGU------UCGCaagUAGCUUGcGCUACG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 34959 | 0.67 | 0.858342 |
Target: 5'- -gGCAAGCuacaUUCcgcCGAACGCGAaGCu -3' miRNA: 3'- gaCGUUCGc---AAGua-GCUUGCGCUaCG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 13262 | 0.67 | 0.867075 |
Target: 5'- -gGCAGGCGgaCAacacggcgcgccUgGAGCGCGAuuuucUGCg -3' miRNA: 3'- gaCGUUCGCaaGU------------AgCUUGCGCU-----ACG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 19931 | 0.67 | 0.867075 |
Target: 5'- -cGC-GGCGgcCG-CGAACGCGGUGa -3' miRNA: 3'- gaCGuUCGCaaGUaGCUUGCGCUACg -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 25555 | 0.66 | 0.899126 |
Target: 5'- -aGCAAGCGgcccuugCGAcccggcugGCGCGcgGCg -3' miRNA: 3'- gaCGUUCGCaagua--GCU--------UGCGCuaCG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 29520 | 0.66 | 0.899126 |
Target: 5'- cCUGCGAG-G---AUCGGACGCGGUccaGCa -3' miRNA: 3'- -GACGUUCgCaagUAGCUUGCGCUA---CG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 3862 | 0.66 | 0.899126 |
Target: 5'- gUGCuuGAGCGUcgCgAUCGGcaGCGCG-UGCg -3' miRNA: 3'- gACG--UUCGCAa-G-UAGCU--UGCGCuACG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 26314 | 0.67 | 0.840074 |
Target: 5'- gCUGCAGaucGCacagaaGUUCAUCGcuuCGCGcgGCg -3' miRNA: 3'- -GACGUU---CG------CAAGUAGCuu-GCGCuaCG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 21254 | 0.67 | 0.840074 |
Target: 5'- -gGCAAcCGgcgCAUCGAACGgcuacgcgcuCGAUGCg -3' miRNA: 3'- gaCGUUcGCaa-GUAGCUUGC----------GCUACG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 34482 | 0.68 | 0.820803 |
Target: 5'- -aGCGGGcCGUcggcucggUCGUCGGAU-CGAUGCg -3' miRNA: 3'- gaCGUUC-GCA--------AGUAGCUUGcGCUACG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 3341 | 0.76 | 0.351793 |
Target: 5'- -cGCAAGCGUUCAgcaaCGugaGACGCGAgacGCa -3' miRNA: 3'- gaCGUUCGCAAGUa---GC---UUGCGCUa--CG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 9331 | 0.75 | 0.43923 |
Target: 5'- -gGCGAGCGUUCGcCGGACGCca-GCu -3' miRNA: 3'- gaCGUUCGCAAGUaGCUUGCGcuaCG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 19417 | 0.71 | 0.642892 |
Target: 5'- aUGCGccgaccAGCGcaUUCGcCGAACGCGggGCg -3' miRNA: 3'- gACGU------UCGC--AAGUaGCUUGCGCuaCG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 19695 | 0.7 | 0.678128 |
Target: 5'- -cGUGAGcCGUUCGaguucggCGAAgGCGAUGCc -3' miRNA: 3'- gaCGUUC-GCAAGUa------GCUUgCGCUACG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 23224 | 0.7 | 0.724342 |
Target: 5'- -cGCAGGCGcUgGcCGGGCGCGGgccgGCg -3' miRNA: 3'- gaCGUUCGCaAgUaGCUUGCGCUa---CG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 27553 | 0.69 | 0.779635 |
Target: 5'- -gGCAucgGGCGcUCGUCGGcggucgccgcGCGCGcgGCc -3' miRNA: 3'- gaCGU---UCGCaAGUAGCU----------UGCGCuaCG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 35961 | 0.68 | 0.810821 |
Target: 5'- gUGCGAGCGaUCG-CGAAUGcCGAUacGCc -3' miRNA: 3'- gACGUUCGCaAGUaGCUUGC-GCUA--CG- -5' |
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27632 | 5' | -49.5 | NC_005882.1 | + | 4522 | 0.68 | 0.820803 |
Target: 5'- -cGCAGGuCGaggUCGUCGAGgcUGCGcgGCc -3' miRNA: 3'- gaCGUUC-GCa--AGUAGCUU--GCGCuaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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