miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27632 5' -49.5 NC_005882.1 + 1442 0.7 0.688627
Target:  5'- uCUGCGAGCugGUUCgauucugGUCuGAGgGUGAUGCa -3'
miRNA:   3'- -GACGUUCG--CAAG-------UAG-CUUgCGCUACG- -5'
27632 5' -49.5 NC_005882.1 + 1636 0.68 0.820803
Target:  5'- -cGuCAAGUaaUCGUCGAGCuGCGcgGCg -3'
miRNA:   3'- gaC-GUUCGcaAGUAGCUUG-CGCuaCG- -5'
27632 5' -49.5 NC_005882.1 + 2219 1.14 0.001119
Target:  5'- cCUGCAAGCGUUCAUCGAACGCGAUGCg -3'
miRNA:   3'- -GACGUUCGCAAGUAGCUUGCGCUACG- -5'
27632 5' -49.5 NC_005882.1 + 2282 0.69 0.779635
Target:  5'- -cGCAucGCGUUCGaUGAACGCu-UGCa -3'
miRNA:   3'- gaCGUu-CGCAAGUaGCUUGCGcuACG- -5'
27632 5' -49.5 NC_005882.1 + 3341 0.76 0.351793
Target:  5'- -cGCAAGCGUUCAgcaaCGugaGACGCGAgacGCa -3'
miRNA:   3'- gaCGUUCGCAAGUa---GC---UUGCGCUa--CG- -5'
27632 5' -49.5 NC_005882.1 + 3670 0.75 0.428909
Target:  5'- -cGCAAGCGg-CGUCGA-CGCGcUGCg -3'
miRNA:   3'- gaCGUUCGCaaGUAGCUuGCGCuACG- -5'
27632 5' -49.5 NC_005882.1 + 3862 0.66 0.899126
Target:  5'- gUGCuuGAGCGUcgCgAUCGGcaGCGCG-UGCg -3'
miRNA:   3'- gACG--UUCGCAa-G-UAGCU--UGCGCuACG- -5'
27632 5' -49.5 NC_005882.1 + 4522 0.68 0.820803
Target:  5'- -cGCAGGuCGaggUCGUCGAGgcUGCGcgGCc -3'
miRNA:   3'- gaCGUUC-GCa--AGUAGCUU--GCGCuaCG- -5'
27632 5' -49.5 NC_005882.1 + 5742 0.67 0.840074
Target:  5'- cCUGCAuAGCGUUgAU-GAGCGuCGA-GCa -3'
miRNA:   3'- -GACGU-UCGCAAgUAgCUUGC-GCUaCG- -5'
27632 5' -49.5 NC_005882.1 + 6038 0.66 0.899126
Target:  5'- gUGCGAGCaGUUgGUCGGgauggACGCcauacAUGCg -3'
miRNA:   3'- gACGUUCG-CAAgUAGCU-----UGCGc----UACG- -5'
27632 5' -49.5 NC_005882.1 + 7992 0.66 0.913333
Target:  5'- gCUGUAcauGGCGcUCGaCGuugcCGCGAUGCc -3'
miRNA:   3'- -GACGU---UCGCaAGUaGCuu--GCGCUACG- -5'
27632 5' -49.5 NC_005882.1 + 8060 0.67 0.840074
Target:  5'- -gGCAucGCGgcaaCGUCGAGCGCcAUGUa -3'
miRNA:   3'- gaCGUu-CGCaa--GUAGCUUGCGcUACG- -5'
27632 5' -49.5 NC_005882.1 + 8403 0.67 0.872181
Target:  5'- -cGCGAGCGgcgcaaucucagCGUCGAACGCa---- -3'
miRNA:   3'- gaCGUUCGCaa----------GUAGCUUGCGcuacg -5'
27632 5' -49.5 NC_005882.1 + 9229 0.66 0.906385
Target:  5'- -gGCGAGCGccugcgCGagGAGCGUGA-GCg -3'
miRNA:   3'- gaCGUUCGCaa----GUagCUUGCGCUaCG- -5'
27632 5' -49.5 NC_005882.1 + 9331 0.75 0.43923
Target:  5'- -gGCGAGCGUUCGcCGGACGCca-GCu -3'
miRNA:   3'- gaCGUUCGCAAGUaGCUUGCGcuaCG- -5'
27632 5' -49.5 NC_005882.1 + 10120 0.7 0.68979
Target:  5'- -aGCGGGCGUagAUUGGGCGgcgcuUGGUGCg -3'
miRNA:   3'- gaCGUUCGCAagUAGCUUGC-----GCUACG- -5'
27632 5' -49.5 NC_005882.1 + 13075 0.67 0.840074
Target:  5'- gCUGC-GGCGgcuggCGUCGA-CGUGGUGg -3'
miRNA:   3'- -GACGuUCGCaa---GUAGCUuGCGCUACg -5'
27632 5' -49.5 NC_005882.1 + 13262 0.67 0.867075
Target:  5'- -gGCAGGCGgaCAacacggcgcgccUgGAGCGCGAuuuucUGCg -3'
miRNA:   3'- gaCGUUCGCaaGU------------AgCUUGCGCU-----ACG- -5'
27632 5' -49.5 NC_005882.1 + 13452 0.68 0.810821
Target:  5'- uUGUAAGUuUUCGaaUCuGAGCGCGAUcGCg -3'
miRNA:   3'- gACGUUCGcAAGU--AG-CUUGCGCUA-CG- -5'
27632 5' -49.5 NC_005882.1 + 14953 0.7 0.678128
Target:  5'- cCUGgAcuGCG-UCggCGAACGUGAUGCg -3'
miRNA:   3'- -GACgUu-CGCaAGuaGCUUGCGCUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.