miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27633 3' -62.5 NC_005882.1 + 12715 0.72 0.090116
Target:  5'- aGACGCaGCgCGCggcgGCGCUCGC-CGGCg -3'
miRNA:   3'- aCUGCGgCGgGCG----UGCGAGCGcGUCG- -5'
27633 3' -62.5 NC_005882.1 + 27569 0.72 0.095303
Target:  5'- cGGCgGUCGCCgCGCGCGCggcCGC-CGGCa -3'
miRNA:   3'- aCUG-CGGCGG-GCGUGCGa--GCGcGUCG- -5'
27633 3' -62.5 NC_005882.1 + 9549 0.72 0.098001
Target:  5'- ---gGCCGCCaGCGCGCcaaUCGCaGCGGCu -3'
miRNA:   3'- acugCGGCGGgCGUGCG---AGCG-CGUCG- -5'
27633 3' -62.5 NC_005882.1 + 15457 0.72 0.098001
Target:  5'- aGGCGCCGCCCGUgaaGCGCgggagcCGaucaaGCAGg -3'
miRNA:   3'- aCUGCGGCGGGCG---UGCGa-----GCg----CGUCg -5'
27633 3' -62.5 NC_005882.1 + 22071 0.72 0.100771
Target:  5'- --cCGCCGCggCCGUugaGCUgGCGCAGCa -3'
miRNA:   3'- acuGCGGCG--GGCGug-CGAgCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 2144 0.72 0.103615
Target:  5'- -aACaCCGgCCGCGUGCUCGCGCuGCg -3'
miRNA:   3'- acUGcGGCgGGCGUGCGAGCGCGuCG- -5'
27633 3' -62.5 NC_005882.1 + 4738 0.72 0.106534
Target:  5'- --cCGCUGCa-GCuCGUUCGCGCAGCg -3'
miRNA:   3'- acuGCGGCGggCGuGCGAGCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 29172 0.72 0.106534
Target:  5'- cGGCuaCGCCgGCGCGCcguugcucgCGUGCGGCc -3'
miRNA:   3'- aCUGcgGCGGgCGUGCGa--------GCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 17163 0.71 0.10953
Target:  5'- cGGCGCgaccagCGCCUGCGCGUcggcauucaggUCGCGC-GCg -3'
miRNA:   3'- aCUGCG------GCGGGCGUGCG-----------AGCGCGuCG- -5'
27633 3' -62.5 NC_005882.1 + 12388 0.71 0.115761
Target:  5'- cGGCGCCGCCgGCAgcCGUcaCGCGCugaucGCg -3'
miRNA:   3'- aCUGCGGCGGgCGU--GCGa-GCGCGu----CG- -5'
27633 3' -62.5 NC_005882.1 + 6470 0.71 0.119
Target:  5'- gUGGCuGUCGCCCagGCA-GCgCGCGCGGCc -3'
miRNA:   3'- -ACUG-CGGCGGG--CGUgCGaGCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 12078 0.71 0.119
Target:  5'- gGACGCCGUcagcgUCGUugGUgCGCGCGGg -3'
miRNA:   3'- aCUGCGGCG-----GGCGugCGaGCGCGUCg -5'
27633 3' -62.5 NC_005882.1 + 27642 0.71 0.119
Target:  5'- cGuCGCCauGCCgGCGgcCGCgCGCGCGGCg -3'
miRNA:   3'- aCuGCGG--CGGgCGU--GCGaGCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 8729 0.71 0.119
Target:  5'- cGACGCagCGCCUGCgaaaagcguACGCcgUCGaCGCAGCc -3'
miRNA:   3'- aCUGCG--GCGGGCG---------UGCG--AGC-GCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 28337 0.71 0.121986
Target:  5'- gUGACGCuggagacCGCCUGCGCgGC-CGCcgGCGGCa -3'
miRNA:   3'- -ACUGCG-------GCGGGCGUG-CGaGCG--CGUCG- -5'
27633 3' -62.5 NC_005882.1 + 3271 0.71 0.122322
Target:  5'- ---gGCCGgCCGC-CG-UCGCGCGGCg -3'
miRNA:   3'- acugCGGCgGGCGuGCgAGCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 28127 0.71 0.12573
Target:  5'- -aGCGCCaucGCCUGUuuuGCGCUCaccgccgcGCGCAGCu -3'
miRNA:   3'- acUGCGG---CGGGCG---UGCGAG--------CGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 28262 0.7 0.129226
Target:  5'- aGGUGCCGCCgGCG-GC-CGCGCAGg -3'
miRNA:   3'- aCUGCGGCGGgCGUgCGaGCGCGUCg -5'
27633 3' -62.5 NC_005882.1 + 12627 0.7 0.132449
Target:  5'- cGACcgcgccaGCCGCCaGUGCGCcgaUCGCcGCAGCg -3'
miRNA:   3'- aCUG-------CGGCGGgCGUGCG---AGCG-CGUCG- -5'
27633 3' -62.5 NC_005882.1 + 19789 0.7 0.132812
Target:  5'- uUGGCGagcaCGCCaCGCGCGagCGCGcCGGCg -3'
miRNA:   3'- -ACUGCg---GCGG-GCGUGCgaGCGC-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.