miRNA display CGI


Results 1 - 20 of 155 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27633 3' -62.5 NC_005882.1 + 3202 1.11 0.000079
Target:  5'- gUGACGCCGCCCGCACGCUCGCGCAGCa -3'
miRNA:   3'- -ACUGCGGCGGGCGUGCGAGCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 19874 0.83 0.014298
Target:  5'- cGGCGCCcgucgucgucacGCCgGCGCGCUCGCGCguGGCg -3'
miRNA:   3'- aCUGCGG------------CGGgCGUGCGAGCGCG--UCG- -5'
27633 3' -62.5 NC_005882.1 + 7755 0.81 0.018053
Target:  5'- cGACGCCGCCCGCgaGCGCcUCGa-CAGCa -3'
miRNA:   3'- aCUGCGGCGGGCG--UGCG-AGCgcGUCG- -5'
27633 3' -62.5 NC_005882.1 + 18136 0.77 0.04063
Target:  5'- cGGCGCUGCgCaCGCGCUUGCuGCAGCu -3'
miRNA:   3'- aCUGCGGCGgGcGUGCGAGCG-CGUCG- -5'
27633 3' -62.5 NC_005882.1 + 7414 0.76 0.047858
Target:  5'- cGACGCCgauguuccgggcauGCCCGCaAUGgUCGaCGCAGCg -3'
miRNA:   3'- aCUGCGG--------------CGGGCG-UGCgAGC-GCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 13997 0.76 0.050247
Target:  5'- gGACGaucaggaCGCCCGCuccgaggcugugaucGCGCUCGUGCAGa -3'
miRNA:   3'- aCUGCg------GCGGGCG---------------UGCGAGCGCGUCg -5'
27633 3' -62.5 NC_005882.1 + 17061 0.76 0.052752
Target:  5'- cGACGCCGCacugaacaccuuguCCGCGCGCgaccugaaugccgaCGCGCAGg -3'
miRNA:   3'- aCUGCGGCG--------------GGCGUGCGa-------------GCGCGUCg -5'
27633 3' -62.5 NC_005882.1 + 11929 0.75 0.055695
Target:  5'- cGGCGCCGCCgCGCcCGUggcCGCGCAaGUg -3'
miRNA:   3'- aCUGCGGCGG-GCGuGCGa--GCGCGU-CG- -5'
27633 3' -62.5 NC_005882.1 + 16701 0.75 0.057307
Target:  5'- cGACGUCGaCgCGCGCGUcCGCGCAGg -3'
miRNA:   3'- aCUGCGGC-GgGCGUGCGaGCGCGUCg -5'
27633 3' -62.5 NC_005882.1 + 6398 0.74 0.066071
Target:  5'- cGugGCCGgCCGCGCGCgcugccuggGCGaCAGCc -3'
miRNA:   3'- aCugCGGCgGGCGUGCGag-------CGC-GUCG- -5'
27633 3' -62.5 NC_005882.1 + 16059 0.74 0.066071
Target:  5'- cGGCGCaCGCacccgccgaCGUGCGCguccgCGCGCAGCu -3'
miRNA:   3'- aCUGCG-GCGg--------GCGUGCGa----GCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 22652 0.74 0.066071
Target:  5'- cGGCGCaguucgGCCCGCA-GCUCGC-CGGCu -3'
miRNA:   3'- aCUGCGg-----CGGGCGUgCGAGCGcGUCG- -5'
27633 3' -62.5 NC_005882.1 + 23674 0.74 0.067973
Target:  5'- aUGACGUCGCCCGUacgGCGCacguucucgaagUUGCGCAuguGCg -3'
miRNA:   3'- -ACUGCGGCGGGCG---UGCG------------AGCGCGU---CG- -5'
27633 3' -62.5 NC_005882.1 + 3326 0.74 0.069928
Target:  5'- -cGCGCagCGCCCGCGCGCaaGCGUucAGCa -3'
miRNA:   3'- acUGCG--GCGGGCGUGCGagCGCG--UCG- -5'
27633 3' -62.5 NC_005882.1 + 23201 0.73 0.07612
Target:  5'- -uGCGCCGaUCgGCacgACGCUCGCGCAGg -3'
miRNA:   3'- acUGCGGC-GGgCG---UGCGAGCGCGUCg -5'
27633 3' -62.5 NC_005882.1 + 12125 0.73 0.078299
Target:  5'- cUGACGgCGUCCGCGCGCca--GCGGCu -3'
miRNA:   3'- -ACUGCgGCGGGCGUGCGagcgCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 8343 0.73 0.078299
Target:  5'- cGACGCUGagaUUGCGcCGCUCGCGC-GCa -3'
miRNA:   3'- aCUGCGGCg--GGCGU-GCGAGCGCGuCG- -5'
27633 3' -62.5 NC_005882.1 + 21349 0.73 0.080765
Target:  5'- aUGACGUCGCCgGC-CGCcgucgccgcaucgagCGCGUAGCc -3'
miRNA:   3'- -ACUGCGGCGGgCGuGCGa--------------GCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 29443 0.72 0.089112
Target:  5'- cUGACGCgGCUCGCGCGCgaguacggcuaugCGUucaagauuucggGCAGCa -3'
miRNA:   3'- -ACUGCGgCGGGCGUGCGa------------GCG------------CGUCG- -5'
27633 3' -62.5 NC_005882.1 + 28971 0.72 0.090116
Target:  5'- cGACGUCccugaGCCCGUuuucACGCUCGUGUacgAGCa -3'
miRNA:   3'- aCUGCGG-----CGGGCG----UGCGAGCGCG---UCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.