miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27633 3' -62.5 NC_005882.1 + 453 0.68 0.178233
Target:  5'- aGAuCGCCGCUCGCcaACGCgaccuguUCGCG-AGCc -3'
miRNA:   3'- aCU-GCGGCGGGCG--UGCG-------AGCGCgUCG- -5'
27633 3' -62.5 NC_005882.1 + 680 0.67 0.226227
Target:  5'- cGGCGCCGaCCagGCGaaccaGCUCGgGC-GCg -3'
miRNA:   3'- aCUGCGGC-GGg-CGUg----CGAGCgCGuCG- -5'
27633 3' -62.5 NC_005882.1 + 1551 0.7 0.136489
Target:  5'- cGACGCCcaUCGCAucgggcguCGC-CGCGCAGCu -3'
miRNA:   3'- aCUGCGGcgGGCGU--------GCGaGCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 1642 0.67 0.226227
Target:  5'- gGACGCCGUCaaGUAaucgucgaGCU-GCGCGGCg -3'
miRNA:   3'- aCUGCGGCGGg-CGUg-------CGAgCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 1717 0.68 0.187939
Target:  5'- -uACGCCGaauCCCGUcaGCGUcaccgugucgcccUUGCGCAGCg -3'
miRNA:   3'- acUGCGGC---GGGCG--UGCG-------------AGCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 2144 0.72 0.103615
Target:  5'- -aACaCCGgCCGCGUGCUCGCGCuGCg -3'
miRNA:   3'- acUGcGGCgGGCGUGCGAGCGCGuCG- -5'
27633 3' -62.5 NC_005882.1 + 2416 0.67 0.244301
Target:  5'- uUGGCuUCGUCCGC-CaGCUCGCGaacgaGGCg -3'
miRNA:   3'- -ACUGcGGCGGGCGuG-CGAGCGCg----UCG- -5'
27633 3' -62.5 NC_005882.1 + 3202 1.11 0.000079
Target:  5'- gUGACGCCGCCCGCACGCUCGCGCAGCa -3'
miRNA:   3'- -ACUGCGGCGGGCGUGCGAGCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 3271 0.71 0.122322
Target:  5'- ---gGCCGgCCGC-CG-UCGCGCGGCg -3'
miRNA:   3'- acugCGGCgGGCGuGCgAGCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 3326 0.74 0.069928
Target:  5'- -cGCGCagCGCCCGCGCGCaaGCGUucAGCa -3'
miRNA:   3'- acUGCG--GCGGGCGUGCGagCGCG--UCG- -5'
27633 3' -62.5 NC_005882.1 + 3389 0.67 0.244301
Target:  5'- cUGaACGCuUGCgCGCggGCGCU-GCGCGGCc -3'
miRNA:   3'- -AC-UGCG-GCGgGCG--UGCGAgCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 3579 0.66 0.272961
Target:  5'- -cGCGUCGCgUGCugGUcaucgugagccgagUGCGCAGCg -3'
miRNA:   3'- acUGCGGCGgGCGugCGa-------------GCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 3621 0.66 0.250587
Target:  5'- cGACGCCGCuuGCGuCGaucacgUCGCcgacCGGCu -3'
miRNA:   3'- aCUGCGGCGggCGU-GCg-----AGCGc---GUCG- -5'
27633 3' -62.5 NC_005882.1 + 4021 0.67 0.220459
Target:  5'- aGA-GCaGCCCGgAagccCGCuUCGCGCAGCu -3'
miRNA:   3'- aCUgCGgCGGGCgU----GCG-AGCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 4181 0.67 0.220459
Target:  5'- cGACgGCCaggaGCCCGcCAUGCUU-CGCAGUc -3'
miRNA:   3'- aCUG-CGG----CGGGC-GUGCGAGcGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 4738 0.72 0.106534
Target:  5'- --cCGCUGCa-GCuCGUUCGCGCAGCg -3'
miRNA:   3'- acuGCGGCGggCGuGCGAGCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 4764 0.68 0.183515
Target:  5'- gGuACGCCGUCCGgauaGCGCUguUGCAGCc -3'
miRNA:   3'- aC-UGCGGCGGGCg---UGCGAgcGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 4855 0.67 0.2468
Target:  5'- --uUGCCGCCUcgaucagcgagagcgGCGCGaguucgaCGCGCGGCg -3'
miRNA:   3'- acuGCGGCGGG---------------CGUGCga-----GCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 4945 0.68 0.183515
Target:  5'- cGAccuCGuuGCgCCGCGCGUcgaacUCGCGCcGCu -3'
miRNA:   3'- aCU---GCggCG-GGCGUGCG-----AGCGCGuCG- -5'
27633 3' -62.5 NC_005882.1 + 5057 0.68 0.180617
Target:  5'- cUGAaGCCGCUCGCAagggcaaggcacugcCGUUCG-GCGGCc -3'
miRNA:   3'- -ACUgCGGCGGGCGU---------------GCGAGCgCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.