miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27633 3' -62.5 NC_005882.1 + 28035 0.66 0.270248
Target:  5'- gGAaGCCGa--GCugGCgaagcugCGCGCGGCg -3'
miRNA:   3'- aCUgCGGCgggCGugCGa------GCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 12551 0.66 0.257007
Target:  5'- cGGCGCUGCggcgaucggCGCACuggcgGCUgGCGCGGUc -3'
miRNA:   3'- aCUGCGGCGg--------GCGUG-----CGAgCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 11822 0.66 0.257007
Target:  5'- cGcCGCgGCCaUGCuuCGC-CGCGCGGUg -3'
miRNA:   3'- aCuGCGgCGG-GCGu-GCGaGCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 6622 0.66 0.277072
Target:  5'- gGACGCCaGCCaugaaGU-CG-UCGUGCGGCg -3'
miRNA:   3'- aCUGCGG-CGGg----CGuGCgAGCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 3621 0.66 0.250587
Target:  5'- cGACGCCGCuuGCGuCGaucacgUCGCcgacCGGCu -3'
miRNA:   3'- aCUGCGGCGggCGU-GCg-----AGCGc---GUCG- -5'
27633 3' -62.5 NC_005882.1 + 15496 0.66 0.270248
Target:  5'- gUGAUGCUGUCCGaguCGUgguaUCGCG-AGCa -3'
miRNA:   3'- -ACUGCGGCGGGCgu-GCG----AGCGCgUCG- -5'
27633 3' -62.5 NC_005882.1 + 27010 0.66 0.262898
Target:  5'- gGGCGCgGCgcgcucgUCGUugGCcgCGCGCuGCu -3'
miRNA:   3'- aCUGCGgCG-------GGCGugCGa-GCGCGuCG- -5'
27633 3' -62.5 NC_005882.1 + 22912 0.66 0.249953
Target:  5'- --gUGCCGCCCgagucguucuucaGCACGagauUCGCcGCGGCc -3'
miRNA:   3'- acuGCGGCGGG-------------CGUGCg---AGCG-CGUCG- -5'
27633 3' -62.5 NC_005882.1 + 10248 0.66 0.250587
Target:  5'- aUGACGCCGCCCaagaguGC-CGCgaacaaCGUGacuuuCAGCa -3'
miRNA:   3'- -ACUGCGGCGGG------CGuGCGa-----GCGC-----GUCG- -5'
27633 3' -62.5 NC_005882.1 + 16308 0.66 0.260922
Target:  5'- gUGAagaGCUGCCgGCACGCaaguuccuggugcCGCGCcaggaGGCg -3'
miRNA:   3'- -ACUg--CGGCGGgCGUGCGa------------GCGCG-----UCG- -5'
27633 3' -62.5 NC_005882.1 + 12345 0.66 0.284032
Target:  5'- cGGCGCCGaUCgGCaACGCUgGUuCGGCc -3'
miRNA:   3'- aCUGCGGC-GGgCG-UGCGAgCGcGUCG- -5'
27633 3' -62.5 NC_005882.1 + 28358 0.66 0.270248
Target:  5'- aGGCGCaGUCCGCGaug-CGCGUGGCc -3'
miRNA:   3'- aCUGCGgCGGGCGUgcgaGCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 26308 0.66 0.277072
Target:  5'- aGGCucGCUGCagauCGCAcagaaguucauCGCuUCGCGCGGCg -3'
miRNA:   3'- aCUG--CGGCGg---GCGU-----------GCG-AGCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 17834 0.66 0.277072
Target:  5'- gUGGCGCUG-UCGCACGacgagaucaUCGUGCgaGGCa -3'
miRNA:   3'- -ACUGCGGCgGGCGUGCg--------AGCGCG--UCG- -5'
27633 3' -62.5 NC_005882.1 + 16534 0.66 0.284032
Target:  5'- -uGCGCUGCgCGgAUGCUUGCcgacCAGCa -3'
miRNA:   3'- acUGCGGCGgGCgUGCGAGCGc---GUCG- -5'
27633 3' -62.5 NC_005882.1 + 19586 0.66 0.262898
Target:  5'- cGAcCGCCGCCacagcgaGCAUGUgUCGUaugccgaGCAGCu -3'
miRNA:   3'- aCU-GCGGCGGg------CGUGCG-AGCG-------CGUCG- -5'
27633 3' -62.5 NC_005882.1 + 27620 0.66 0.277072
Target:  5'- cGGCGUC-CCUGCAgCGCaUCaaCGCAGCu -3'
miRNA:   3'- aCUGCGGcGGGCGU-GCG-AGc-GCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 27107 0.66 0.277072
Target:  5'- gGAUGCUGCUgGCcCGCguccUGgGCGGCc -3'
miRNA:   3'- aCUGCGGCGGgCGuGCGa---GCgCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 14449 0.66 0.250587
Target:  5'- -aGCGuuGCUCGCA-GCcagccaGCGCGGCa -3'
miRNA:   3'- acUGCggCGGGCGUgCGag----CGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 11900 0.66 0.250587
Target:  5'- cGACGCCGa--GgACGaucacCGCGCGGCg -3'
miRNA:   3'- aCUGCGGCgggCgUGCga---GCGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.