miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27633 3' -62.5 NC_005882.1 + 1551 0.7 0.136489
Target:  5'- cGACGCCcaUCGCAucgggcguCGC-CGCGCAGCu -3'
miRNA:   3'- aCUGCGGcgGGCGU--------GCGaGCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 12715 0.72 0.090116
Target:  5'- aGACGCaGCgCGCggcgGCGCUCGC-CGGCg -3'
miRNA:   3'- aCUGCGgCGgGCG----UGCGAGCGcGUCG- -5'
27633 3' -62.5 NC_005882.1 + 28971 0.72 0.090116
Target:  5'- cGACGUCccugaGCCCGUuuucACGCUCGUGUacgAGCa -3'
miRNA:   3'- aCUGCGG-----CGGGCG----UGCGAGCGCG---UCG- -5'
27633 3' -62.5 NC_005882.1 + 27569 0.72 0.095303
Target:  5'- cGGCgGUCGCCgCGCGCGCggcCGC-CGGCa -3'
miRNA:   3'- aCUG-CGGCGG-GCGUGCGa--GCGcGUCG- -5'
27633 3' -62.5 NC_005882.1 + 29172 0.72 0.106534
Target:  5'- cGGCuaCGCCgGCGCGCcguugcucgCGUGCGGCc -3'
miRNA:   3'- aCUGcgGCGGgCGUGCGa--------GCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 12078 0.71 0.119
Target:  5'- gGACGCCGUcagcgUCGUugGUgCGCGCGGg -3'
miRNA:   3'- aCUGCGGCG-----GGCGugCGaGCGCGUCg -5'
27633 3' -62.5 NC_005882.1 + 3271 0.71 0.122322
Target:  5'- ---gGCCGgCCGC-CG-UCGCGCGGCg -3'
miRNA:   3'- acugCGGCgGGCGuGCgAGCGCGUCG- -5'
27633 3' -62.5 NC_005882.1 + 28262 0.7 0.129226
Target:  5'- aGGUGCCGCCgGCG-GC-CGCGCAGg -3'
miRNA:   3'- aCUGCGGCGGgCGUgCGaGCGCGUCg -5'
27633 3' -62.5 NC_005882.1 + 19789 0.7 0.132812
Target:  5'- uUGGCGagcaCGCCaCGCGCGagCGCGcCGGCg -3'
miRNA:   3'- -ACUGCg---GCGG-GCGUGCgaGCGC-GUCG- -5'
27633 3' -62.5 NC_005882.1 + 29443 0.72 0.089112
Target:  5'- cUGACGCgGCUCGCGCGCgaguacggcuaugCGUucaagauuucggGCAGCa -3'
miRNA:   3'- -ACUGCGgCGGGCGUGCGa------------GCG------------CGUCG- -5'
27633 3' -62.5 NC_005882.1 + 8343 0.73 0.078299
Target:  5'- cGACGCUGagaUUGCGcCGCUCGCGC-GCa -3'
miRNA:   3'- aCUGCGGCg--GGCGU-GCGAGCGCGuCG- -5'
27633 3' -62.5 NC_005882.1 + 23201 0.73 0.07612
Target:  5'- -uGCGCCGaUCgGCacgACGCUCGCGCAGg -3'
miRNA:   3'- acUGCGGC-GGgCG---UGCGAGCGCGUCg -5'
27633 3' -62.5 NC_005882.1 + 18136 0.77 0.04063
Target:  5'- cGGCGCUGCgCaCGCGCUUGCuGCAGCu -3'
miRNA:   3'- aCUGCGGCGgGcGUGCGAGCG-CGUCG- -5'
27633 3' -62.5 NC_005882.1 + 13997 0.76 0.050247
Target:  5'- gGACGaucaggaCGCCCGCuccgaggcugugaucGCGCUCGUGCAGa -3'
miRNA:   3'- aCUGCg------GCGGGCG---------------UGCGAGCGCGUCg -5'
27633 3' -62.5 NC_005882.1 + 17061 0.76 0.052752
Target:  5'- cGACGCCGCacugaacaccuuguCCGCGCGCgaccugaaugccgaCGCGCAGg -3'
miRNA:   3'- aCUGCGGCG--------------GGCGUGCGa-------------GCGCGUCg -5'
27633 3' -62.5 NC_005882.1 + 11929 0.75 0.055695
Target:  5'- cGGCGCCGCCgCGCcCGUggcCGCGCAaGUg -3'
miRNA:   3'- aCUGCGGCGG-GCGuGCGa--GCGCGU-CG- -5'
27633 3' -62.5 NC_005882.1 + 16701 0.75 0.057307
Target:  5'- cGACGUCGaCgCGCGCGUcCGCGCAGg -3'
miRNA:   3'- aCUGCGGC-GgGCGUGCGaGCGCGUCg -5'
27633 3' -62.5 NC_005882.1 + 6398 0.74 0.066071
Target:  5'- cGugGCCGgCCGCGCGCgcugccuggGCGaCAGCc -3'
miRNA:   3'- aCugCGGCgGGCGUGCGag-------CGC-GUCG- -5'
27633 3' -62.5 NC_005882.1 + 22652 0.74 0.066071
Target:  5'- cGGCGCaguucgGCCCGCA-GCUCGC-CGGCu -3'
miRNA:   3'- aCUGCGg-----CGGGCGUgCGAGCGcGUCG- -5'
27633 3' -62.5 NC_005882.1 + 3326 0.74 0.069928
Target:  5'- -cGCGCagCGCCCGCGCGCaaGCGUucAGCa -3'
miRNA:   3'- acUGCG--GCGGGCGUGCGagCGCG--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.